class ItemGroupDef(OE.ODMElement): """ represents ODM v2.0 ItemGroupDef and can serialize as JSON or XML""" OID = T.OID(required=True) Name = T.Name(required=True) Repeating = T.ValueSetString(required=True) Type = T.ValueSetString() IsReferenceData = T.ValueSetString(required=False) DatasetName = T.Name() Domain = T.String() Purpose = T.String() CommentOID = T.OIDRef() Description = T.ODMObject(element_class=Description) ItemGroupRef = T.ODMListObject(element_class=ItemGroupRef) ItemRef = T.ODMListObject(element_class=ItemRef) WorkflowRef = T.ODMListObject(element_class=WorkflowRef) Origin = T.ODMListObject(element_class=Origin) Alias = T.ODMListObject(element_class=Alias) def __len__(self): return len(self.ItemRef) def __getitem__(self, position): return self.ItemRef[position] def __iter__(self): return iter(self.ItemRef)
class Branching(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) Type = T.ValueSetString(required=True) TargetTransition = T.ODMListObject(element_class=TargetTransition, required=True) DefaultTransition = T.ODMListObject(element_class=DefaultTransition)
class MethodDef(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) Type = T.ValueSetString(required=True) Description = T.ODMObject(required=True, element_class=Description) FormalExpression = T.ODMListObject(element_class=FormalExpression) Alias = T.ODMListObject(element_class=Alias)
class Transition(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) SourceOID = T.OIDRef(required=True) TargetOID = T.OIDRef(required=True) StartConditionOID = T.OIDRef() EndConditionOID = T.OIDRef()
class ExceptionEvent(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) ConditionOID = T.OIDRef(required=True) Description = T.ODMObject(element_class=Description) WorkflowRef = T.ODMObject(element_class=WorkflowRef) StudyEventGroupRef = T.ODMListObject(element_class=StudyEventGroupRef) StudyEventRef = T.ODMListObject(element_class=StudyEventRef)
class DurationTimingConstraint(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) StructuralElementOID = T.OIDRef(required=True) DurationTarget = T.DurationDateTimeString(required=True) DurationPreWindow = T.DurationDateTimeString(required=True) DurationPostWindow = T.DurationDateTimeString(required=True) Description = T.ODMObject(element_class=Description)
class ItemDef(OE.ODMElement): """ represents ODM v2.0 ItemDef and can serialize as JSON or XML - ordering of properties matters """ OID = T.OID(required=True) Name = T.Name(required=True) DataType = T.ValueSetString(required=True) Length = T.PositiveInteger() FractionDigits = T.NonNegativeInteger() DatasetVarName = T.Name() SDSVarName = T.SASName() CommentOID = T.String() Description = T.ODMObject(element_class=Description) Question = T.ODMObject(element_class=Question) ExternalQuestion = T.ODMObject(element_class=ExternalQuestion) MeasurementUnitRef = T.ODMListObject(element_class=MeasurementUnitRef) RangeCheck = T.ODMListObject(element_class=RangeCheck) CodeListRef = T.ODMObject(element_class=CodeListRef) Alias = T.ODMListObject(element_class=Alias)
class WorkflowDef(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) Description = T.ODMObject(element_class=Description) WorkflowStart = T.ODMObject(element_class=WorkflowStart, required=True) Transition = T.ODMListObject(element_class=Transition) Branching = T.ODMListObject(element_class=Branching) WorkflowEnd = T.ODMListObject(element_class=WorkflowEnd, required=True)
class Standard(OE.ODMElement): namespace = "def" OID = T.OID(required=True) Name = T.Name(required=True) Type = T.String(required=True) PublishingSet = T.String() Version = T.String(required=True) Status = T.String() CommentOID = T.OIDRef(namespace="def")
class TransitionTimingConstraint(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) TransitionOID = T.OIDRef(required=True) TimepointRelativeTarget = T.DurationDateTimeString(required=True) MethodOID = T.OIDRef() TimepointPreWindow = T.DurationDateTimeString(required=True) TimepointPostWindow = T.DurationDateTimeString(required=True) Description = T.ODMObject(element_class=Description)
class AbsoluteTimingConstraint(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) StudyEventGroupOID = T.OIDRef() StudyEventOID = T.OIDRef() TimepointTarget = T.IncompleteDateTimeString(required=True) TimepointPreWindow = T.DurationDateTimeString(required=True) TimepointPostWindow = T.DurationDateTimeString(required=True) Description = T.ODMObject(element_class=Description)
class MethodDef(OE.ODMElement): """ represents ODM v2.0 MethodDef and can serialize as JSON or XML """ OID = T.OID(required=True) Name = T.Name(required=True) Type = T.ValueSetString(required=True) Description = T.ODMObject(required=True, element_class=Description) MethodSignature = T.ODMObject(element_class=MethodSignature) FormalExpression = T.ODMListObject(element_class=FormalExpression) Alias = T.ODMListObject(element_class=Alias)
class CodeList(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) DataType = T.ValueSetString(required=True) SASFormatName = T.SASFormat() Description = T.ODMObject(element_class=Description) CodeListItem = T.ODMListObject(element_class=CodeListItem) EnumeratedItem = T.ODMListObject(element_class=EnumeratedItem) ExternalCodeList = T.ODMObject(element_class=ExternalCodeList) Alias = T.ODMListObject(element_class=Alias)
class CodeList(OE.ODMElement): """ represents ODM v1.3.2 CodeList element that can serialize as JSON or XML """ OID = T.OID(required=True) Name = T.Name(required=True) DataType = T.ValueSetString(required=True) SASFormatName = T.SASFormat() Description = T.ODMObject(element_class=Description) CodeListItem = T.ODMListObject(element_class=CodeListItem) EnumeratedItem = T.ODMListObject(element_class=EnumeratedItem) ExternalCodeList = T.ODMObject(element_class=ExternalCodeList) Alias = T.ODMListObject(element_class=Alias)
class StudyTiming(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) AbsoluteTimingConstraint = T.ODMListObject( element_class=AbsoluteTimingConstraint) RelativeTimingConstraint = T.ODMListObject( element_class=RelativeTimingConstraint) TransitionTimingConstraint = T.ODMObject( element_class=TransitionTimingConstraint) DurationTimingConstraint = T.ODMListObject( element_class=DurationTimingConstraint)
class RelativeTimingConstraint(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) PredecessorStudyEventGroupOID = T.OIDRef() PredecessorStudyEventOID = T.OIDRef() SuccessorStudyEventGroupOID = T.OIDRef() SuccessorStudyEventOID = T.OIDRef() Type = T.ValueSetString() TimepointRelativeTarget = T.DurationDateTimeString(required=True) TimepointPreWindow = T.DurationDateTimeString(required=True) TimepointPostWindow = T.DurationDateTimeString(required=True) Description = T.ODMObject(element_class=Description)
class MetaDataVersion(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) Description = T.String(required=False) Include = T.ODMObject(element_class=Include) Protocol = T.ODMObject(element_class=Protocol) StudyEventDef = T.ODMListObject(element_class=StudyEventDef) FormDef = T.ODMListObject(element_class=FormDef) ItemGroupDef = T.ODMListObject(element_class=ItemGroupDef) ItemDef = T.ODMListObject(element_class=ItemDef) CodeList = T.ODMListObject(element_class=CodeList) Presentation = T.ODMListObject(element_class=Presentation) ConditionDef = T.ODMListObject(element_class=ConditionDef) MethodDef = T.ODMListObject(element_class=MethodDef)
class MetaDataVersion(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) Description = T.ODMObject(element_class=Description) Include = T.ODMObject(element_class=Include) Protocol = T.ODMObject(element_class=Protocol) StudyStructure = T.ODMObject(element_class=StudyStructure) WorkflowDef = T.ODMListObject(element_class=WorkflowDef) StudyTiming = T.ODMObject(element_class=StudyTiming) StudyEventGroupDef = T.ODMListObject(element_class=StudyEventGroupDef) StudyEventDef = T.ODMListObject(element_class=StudyEventDef) ItemGroupDef = T.ODMListObject(element_class=ItemGroupDef) ItemDef = T.ODMListObject(element_class=ItemDef) CodeList = T.ODMListObject(element_class=CodeList) ConditionDef = T.ODMListObject(element_class=ConditionDef) MethodDef = T.ODMListObject(element_class=MethodDef)
class CodeList(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) DataType = T.ValueSetString(required=True) ExtCodeID = T.String(required=True, namespace="nciodm") CodeListExtensible = T.ValueSetString(required=True, namespace="nciodm") Description = T.ODMObject(element_class=Description) EnumeratedItem = T.ODMListObject(element_class=EnumeratedItem) CDISCSubmissionValue = T.ODMObject(required=True, element_class=CDISCSubmissionValue, namespace="nciodm") CDISCSynonym = T.ODMObject(required=True, element_class=CDISCSynonym, namespace="nciodm") PreferredTerm = T.ODMObject(required=True, element_class=PreferredTerm, namespace="nciodm")
class ItemDef(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) DataType = T.ValueSetString(required=True) Length = T.PositiveInteger() SignificantDigits = T.NonNegativeInteger() SASFieldName = T.SASName() SDSVarName = T.SASName() Origin = T.String() Comment = T.String() Description = T.ODMObject(element_class=Description) Question = T.ODMObject(element_class=Question) ExternalQuestion = T.ODMObject(element_class=ExternalQuestion) MeasurementUnitRef = T.ODMListObject(element_class=MeasurementUnitRef) RangeCheck = T.ODMListObject(element_class=RangeCheck) CodeListRef = T.ODMObject(element_class=CodeListRef) Alias = T.ODMListObject(element_class=Alias)
class FormDef(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) Repeating = T.ValueSetString(required=True) Description = T.ODMObject(element_class=Description) ItemGroupRef = T.ODMListObject(element_class=ItemGroupRef) ArchiveLayout = T.ODMListObject(element_class=ArchiveLayout) Alias = T.ODMListObject(element_class=Alias) def __len__(self): return len(self.ItemGroupRef) def __getitem__(self, position): return self.ItemGroupRef[position] def __iter__(self): return iter(self.ItemGroupRef)
class StudyEventDef(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) Repeating = T.ValueSetString(required=True) Type = T.ValueSetString(required=True) Category = T.String(required=False) Description = T.ODMObject(element_class=Description) FormRef = T.ODMListObject(element_class=FormRef) Alias = T.ODMListObject(element_class=Alias) def __len__(self): """ returns the number of FormRefs in an StudyEventDef object as the length """ return len(self.FormRef) def __getitem__(self, position): """ creates an iterator from an StudyEventDef object that returns the FormRef in position """ return self.FormRef[position] def __iter__(self): return iter(self.FormRef)
class ItemGroupDef(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) Repeating = T.ValueSetString(required=True) IsReferenceData = T.ValueSetString(required=False) SASDatasetName = T.SASName() Domain = T.String() Origin = T.String() Purpose = T.String() Comment = T.String() Description = T.ODMObject(element_class=Description) ItemRef = T.ODMListObject(element_class=ItemRef) Alias = T.ODMListObject(element_class=Alias) def __len__(self): return len(self.ItemRef) def __getitem__(self, position): return self.ItemRef[position] def __iter__(self): return iter(self.ItemRef)
class ConditionDef(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) Description = T.ODMObject(element_class=Description) FormalExpression = T.ODMListObject(element_class=FormalExpression) Alias = T.ODMListObject(element_class=Alias)
class MetaDataVersion(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) Description = T.String(required=False) CodeList = T.ODMListObject(element_class=CodeList)
class Class(OE.ODMElement): namespace = "def" Name = T.Name(required=True) SubClass = T.ODMListObject(element_class=SubClass, namespace="def")
class SubClass(OE.ODMElement): namespace = "def" Name = T.Name(required=True) ParentClass = T.String()
class Picture(OE.ODMElement): PictureFileName = T.FileName(required=True) ImageType = T.Name()
class Location(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) LocationType = T.ValueSetString() MetaDataVersionRef = T.ODMListObject(required=True, element_class=MetaDataVersionRef)
class MeasurementUnit(OE.ODMElement): OID = T.OID(required=True) Name = T.Name(required=True) Symbol = T.ODMObject(required=True, element_class=Symbol) Alias = T.ODMListObject(element_class=Alias)