def email(self, args):
c = self.ctx.conn(args)
a = c.sf.getAdminService()
skipped = []
records = []
for exp in a.lookupExperimenters():
# Handle users without email
if not _(exp.email):
if not args.ignore:
skipped.append(exp)
continue
record = ""
if args.names:
record += '"%s"' % self.format_name(exp)
record += " <%s>" % _(exp.email)
else:
record += _(exp.email)
records.append(record)
if args.one:
for record in records:
self.ctx.out(record)
else:
self.ctx.out(", ".join(records))
if skipped:
self.ctx.err("Missing email addresses:")
for s in skipped:
self.ctx.err(self.format_name(s))
def email(self, args):
c = self.ctx.conn(args)
a = c.sf.getAdminService()
skipped = []
records = []
for exp in a.lookupExperimenters():
# Handle users without email
if not _(exp.email):
if not args.ignore:
skipped.append(exp)
continue
record = ""
if args.names:
record += '"%s"' % self.format_name(exp)
record += " <%s>" % _(exp.email)
else:
record += _(exp.email)
records.append(record)
if args.one:
for record in records:
self.ctx.out(record)
else:
self.ctx.out(", ".join(records))
if skipped:
self.ctx.err("Missing email addresses:")
for s in skipped:
self.ctx.err(self.format_name(s))
def format_name(self, exp):
record = ""
fn = _(exp.firstName)
mn = " "
if _(exp.middleName):
mn = " %s " % _(exp.middleName)
ln = _(exp.lastName)
record += "%s%s%s" % (fn, mn, ln)
return record
def format_name(self, exp):
record = ""
fn = _(exp.firstName)
mn = " "
if _(exp.middleName):
mn = " %s " % _(exp.middleName)
ln = _(exp.lastName)
record += "%s%s%s" % (fn, mn, ln)
return record
def mkentry(self, clientPath):
originalFile = omero.model.OriginalFileI()
parts = clientPath.split("/")
path = "/".join(parts[:-1])
name = parts[-1]
originalFile.path = _(path)
originalFile.name = _(name)
# etc.
entry = omero.model.FilesetEntryI()
entry.clientPath = _(clientPath)
entry.originalFile = originalFile
return entry
def mkentry(self, clientPath):
originalFile = omero.model.OriginalFileI()
parts = clientPath.split("/")
path = "/".join(parts[:-1])
name = parts[-1]
originalFile.path = _(path)
originalFile.name = _(name)
# etc.
entry = omero.model.FilesetEntryI()
entry.clientPath = _(clientPath)
entry.originalFile = originalFile
return entry
def email(self, args):
c = self.ctx.conn(args)
a = c.sf.getAdminService()
r = a.getSecurityRoles()
skipped = []
records = []
for exp in a.lookupExperimenters():
# Handle users without email
if not _(exp.email):
if not args.ignore:
skipped.append(exp)
continue
# Handle deactivated users
if not args.all:
groups = exp.linkedExperimenterGroupList()
group_ids = [x.id.val for x in groups]
if r.userGroupId not in group_ids:
continue
record = ""
if args.names:
record += '"%s"' % self.format_name(exp)
record += " <%s>" % _(exp.email)
else:
record += _(exp.email)
records.append(record)
if args.one:
for record in records:
self.ctx.out(record)
else:
self.ctx.out(", ".join(records))
if skipped:
self.ctx.err("Missing email addresses:")
for s in skipped:
self.ctx.err(self.format_name(s))
def email(self, args):
c = self.ctx.conn(args)
a = c.sf.getAdminService()
r = a.getSecurityRoles()
skipped = []
records = []
for exp in a.lookupExperimenters():
# Handle users without email
if not _(exp.email):
if not args.ignore:
skipped.append(exp)
continue
# Handle deactivated users
if not args.all:
groups = exp.linkedExperimenterGroupList()
group_ids = [x.id.val for x in groups]
if r.userGroupId not in group_ids:
continue
record = ""
if args.names:
record += '"%s"' % self.format_name(exp)
record += " <%s>" % _(exp.email)
else:
record += _(exp.email)
records.append(record)
if args.one:
for record in records:
self.ctx.out(record)
else:
self.ctx.out(", ".join(records))
if skipped:
self.ctx.err("Missing email addresses:")
for s in skipped:
self.ctx.err(self.format_name(s))
def testBasicImport(self):
"""
basic server-side import steps
Once a list of file paths have been passed to the server,
an omero.model.Fileset object will be created which captures
the state of the import.
"""
# This should be passed in by the client
clientInfo = omero.model.FilesetVersionInfoI()
# This will be created server-side
serverInfo = omero.model.FilesetVersionInfoI()
serverInfo.bioformatsReader = _("ExampleReader")
serverInfo.bioformatsVersion = _("v4.4.5 git: abc123")
serverInfo.omeroVersion = _("v.4.4.4 git: def456")
serverInfo.osName = _("Linux")
serverInfo.osArchitecture = _("amd64")
serverInfo.osVersion = _("2.6.38-8-generic")
# Something returned by Locale.getDefault().toString()
serverInfo.locale = "en_US"
# Now that the basics are setup, we
# need to link to all of the original files.
fs = omero.model.FilesetI()
fs.addFilesetEntry(self.mkentry("main_file.txt")) # First!
fs.addFilesetEntry(self.mkentry("uf1.data"))
fs.addFilesetEntry(self.mkentry("uf2.data"))
# Now that the files are all added, we
# add the "activities" that will be
# performed on them.
# Uploading is almost always the first
# step, and must be completed by the clients
# before any other activity.
job1 = omero.model.UploadJobI()
job1.scheduledFor = rtime(time.time() * 1000) # Now
# Set this "started" since we're expecting
# upload to be in process.
# Import is a server-side activity which
# causes the files to be parsed and their
# metadata to be stored.
job2 = omero.model.MetadataImportJobI()
# Other possible activities include "pyramids"
# and "re-import"
fs.linkJob(job1)
fs.linkJob(job2)
def testBasicImport(self):
"""
basic server-side import steps
Once a list of file paths have been passed to the server,
an omero.model.Fileset object will be created which captures
the state of the import.
"""
# This will be created server-side
serverInfo = omero.model.FilesetVersionInfoI()
serverInfo.bioformatsReader = _("ExampleReader")
serverInfo.bioformatsVersion = _("v4.4.5 git: abc123")
serverInfo.omeroVersion = _("v.4.4.4 git: def456")
serverInfo.osName = _("Linux")
serverInfo.osArchitecture = _("amd64")
serverInfo.osVersion = _("2.6.38-8-generic")
# Something returned by Locale.getDefault().toString()
serverInfo.locale = "en_US"
# Now that the basics are setup, we
# need to link to all of the original files.
fs = omero.model.FilesetI()
fs.addFilesetEntry(self.mkentry("main_file.txt")) # First!
fs.addFilesetEntry(self.mkentry("uf1.data"))
fs.addFilesetEntry(self.mkentry("uf2.data"))
# Now that the files are all added, we
# add the "activities" that will be
# performed on them.
# Uploading is almost always the first
# step, and must be completed by the clients
# before any other activity.
job1 = omero.model.UploadJobI()
job1.scheduledFor = rtime(time.time() * 1000) # Now
# Set this "started" since we're expecting
# upload to be in process.
# Import is a server-side activity which
# causes the files to be parsed and their
# metadata to be stored.
job2 = omero.model.MetadataImportJobI()
# Other possible activities include "pyramids"
# and "re-import"
fs.linkJob(job1)
fs.linkJob(job2)
