def populateroi(self, args):
"Add ROIs to an object"
md = self._load(args)
client = self.ctx.conn(args)
# TODO: Configure logging properly
if args.report:
populate_roi.log.setLevel(logging.DEBUG)
else:
populate_roi.log.setLevel(logging.INFO)
factory = populate_roi.PlateAnalysisCtxFactory(client.sf)
ctx = factory.get_analysis_ctx(md.get_id())
count = ctx.get_measurement_count()
if not count:
self.ctx.die(100, "No measurements found")
if args.measurement is not None and args.measurement >= count:
self.ctx.die(100,
"Invalid measurement index: %d" % args.measurement)
for i in range(count):
if args.dry_run:
self.ctx.out("Measurement %d has %s result files." %
(i, ctx.get_result_file_count(i)))
else:
if args.measurement is not None:
if args.measurement != i:
continue
meas = ctx.get_measurement_ctx(i)
meas.parse_and_populate()
def populateroi(self, args):
"Add ROIs to an object"
md = self._load(args)
client = self.ctx.conn(args)
log_level = logging.INFO - (10 * args.verbose) + (10 * args.quiet)
if args.report:
log_level = log_level - 10
factory = populate_roi.PlateAnalysisCtxFactory(client.sf)
ctx = factory.get_analysis_ctx(md.get_id())
count = ctx.get_measurement_count()
if not count:
self.ctx.die(100, "No measurements found")
if args.measurement is not None and args.measurement >= count:
self.ctx.die(100,
"Invalid measurement index: %d" % args.measurement)
for i in range(count):
if args.dry_run:
self.ctx.out("Measurement %d has %s result files." %
(i, ctx.get_result_file_count(i)))
else:
if args.measurement is not None:
if args.measurement != i:
continue
meas = ctx.get_measurement_ctx(i)
meas.parse_and_populate()