def is_installed(version, silent=False): if is_verbose(): inform( "Checking whether the engine %s has been installed correctly..." % NetPyNEEngine.name, indent=1) ret = True try: ret_str = sp.check_output( ['python -c "import netpyne; print(netpyne.__version__)"'], shell=True, stderr=sp.STDOUT) ret = len(ret_str) > 0 if ret and is_verbose(): inform("%s is correctly installed..." % (NetPyNEEngine.name), indent=2) except Exception as err: inform("Couldn't import netpyne into Python: ", err, indent=1) ret = False installed = ret and PyNRNEngine.is_installed( None) and PyNeuroMLEngine.is_installed(None) if not silent: inform("NetPyNE is_installed: %s" % ret, "", indent=1) return installed
def is_installed(version): if is_verbose(): inform("Checking whether the engine %s has been installed correctly..." % MooseEngine.name, indent=1) ret = True try: ret_str = sp.check_output(['python -c "import moose; print(moose.__version__)"'], shell=True,stderr=sp.STDOUT) ret = len(ret_str) > 0 if ret and is_verbose(): inform("%s is correctly installed..." % (MooseEngine.name), indent=2) if ret: import moose ret = 'v%s'%moose.__version__ except Exception as err: inform("Couldn't import moose into Python: ", err, indent=1) ret = False if not ret or not PyNeuroMLEngine.is_installed(None): ret = False inform("Moose is_installed(): %s"%ret, "", indent=1, verbosity=2) return ret
def is_installed(version): PyNestEngine.environment_vars = NestEngine.get_nest_environment() ret = True try: ret_str = check_output(['python -c "import nest; print(nest.version())"'], shell=True, verbosity=2) ret = len(ret_str) > 0 if ret: ret = 'v%s'%ret_str.split('Version')[-1].split()[0] if ret and is_verbose(): inform("%s is correctly installed..." % (PyNestEngine.name), indent=2) if is_verbose(): inform("NEST is installed with Python support...", indent=2) inform("Env vars: %s" % PyNestEngine.environment_vars, indent=2) except Exception as err: inform("Couldn't import NEST into Python: ", err, indent=1) inform("NEST env vars: %s" % PyNestEngine.environment_vars, indent=1) ret = False return ret
def is_installed(version, silent=True): if is_verbose(): inform("Checking whether the engine %s has been installed correctly..." % NetPyNEEngine.name, indent=1) ret = True try: ret_str = sp.check_output(['python -c "import netpyne; print(netpyne.__version__)"'], shell=True,stderr=sp.STDOUT) ret = len(ret_str) > 0 if ret and is_verbose(): inform("%s is correctly installed..." % (NetPyNEEngine.name), indent=2) if ret: ret = 'v%s'%str(ret_str.strip()) except Exception as err: inform("Couldn't import netpyne into Python: ", err, indent=1) ret = False if not PyNRNEngine.is_installed(None) or not PyNeuroMLEngine.is_installed(None): ret = False if not silent: inform("NetPyNE is_installed: %s"%ret, "", indent=1) return ret
def is_installed(version): PyNestEngine.environment_vars = NestEngine.get_nest_environment() ret = True try: ret_str = check_output( ['python -c "import nest; print(nest.version())"'], shell=True) ret = len(ret_str) > 0 if ret and is_verbose(): inform("%s is correctly installed..." % (PyNestEngine.name), indent=2) if is_verbose(): inform("NEST is installed with Python support...", indent=2) inform("Env vars: %s" % PyNestEngine.environment_vars, indent=2) except Exception as err: inform("Couldn't import NEST into Python: ", err, indent=1) inform("NEST env vars: %s" % PyNestEngine.environment_vars, indent=1) ret = False return ret
def is_installed(version): ret = True if is_verbose(): inform("Checking whether %s is installed..." % NeuronEngine.name, indent=1) try: output = check_output(['nrniv', '--version'], verbosity=2) if is_verbose(): inform('%s is installed' % output.strip(), indent=2) ret = 'v%s' % output.split()[3] except OSError: try: environment_vars, path = NeuronEngine.get_nrn_environment() inform('Testing NEURON with env: %s and path: %s' % (environment_vars, path), indent=2) output = check_output([path + '/nrniv', '--version']) if is_verbose(): inform('%s was already installed (by OMV..?)' % output.strip(), indent=2) ret = 'v%s' % output.split()[3] except OSError: inform('NEURON not currently installed', indent=2) ret = False return ret
def is_installed(version): if is_verbose(): inform("Checking whether %s is installed..." % JNeuroMLPyNNNRNEngine.name, indent=1) return JNeuroMLEngine.is_installed( None) and PyNNNRNEngine.is_installed(None)
def is_installed(version): if is_verbose(): inform("Checking whether %s is installed..." % PyNNBrian1Engine.name, indent=1) return PyNNEngine.is_installed(None) and Brian1Engine.is_installed( None)
def is_installed(version): ret = True try: ret_str = sp.check_output( ['python -c "import numba; print(numba.__version__)"'], shell=True, stderr=sp.STDOUT) ret = len(ret_str) > 0 if isinstance(ret_str, bytes): ret_str = ret_str.decode('utf-8') ret = 'v%s' % ret_str.strip() if is_verbose(): inform("numba %s is correctly installed..." % ret, indent=2, verbosity=2) except Exception as err: inform("Couldn't import numba into Python: ", err, indent=1, verbosity=2) ret = False return ret
def is_installed(version): if is_verbose(): inform("Checking whether %s is installed correctly..." % PyNNNRNEngine.name, indent=1) installed = PyNNEngine.is_installed(None) and NeuronEngine.is_installed(None) return installed
def is_installed(version): ret = True try: if is_verbose(): inform("Checking whether %s is installed..." % PyNRNEngine.name, indent=1) import neuron if is_verbose(): inform("PyNEURON version %s is correctly installed..." % neuron.sys.version, indent=2) except Exception as err: inform("Couldn't import NEURON into Python: ", err, indent=1) ret = False return ret
def is_installed(version): if is_verbose(): inform("Checking whether %s is installed..." % PyLemsNeuroML2Engine.name, indent=1) nml2_installed = os.path.isdir(default_nml2_dir) return PyLemsEngine.is_installed(None) and nml2_installed
def is_installed(version): if is_verbose(): inform("Checking whether %s is installed correctly..." % PyNNNRNEngine.name, indent=1) installed = PyNNEngine.is_installed( None) and NeuronEngine.is_installed(None) return installed
def is_installed(cls, version): ret = True try: output = check_output(['nrniv', '--version']) if is_verbose(): inform('%s was already installed locally'%output.strip(), indent=2) except OSError: try: environment_vars, path = NeuronEngine.get_nrn_environment() inform('Testing NEURON with env: %s and path: %s'%(environment_vars, path), indent=2) output = check_output([path+'/nrniv', '--version']) if is_verbose(): inform('%s was already installed (by OMV..?)'%output.strip(), indent=2) except OSError: inform('NEURON not currently installed', indent=2) ret = False return ret
def is_installed(version): ret = True try: if is_verbose(): inform("Checking whether %s is installed..." % PyNeuroMLEngine.name, indent=1) FNULL = open(os.devnull, 'w') sp.check_call(['pynml' if os.name != 'nt' else 'pynml.bat', '-h'], stdout=FNULL) except OSError: ret = False return ret
def is_installed(version): ret = True try: import pyNN if is_verbose(): inform("pyNN version %s is correctly installed..." % pyNN.__version__, indent=2) except Exception as err: inform("Couldn't import pyNN into Python: ", err, indent=1) ret = False return ret
def is_installed(version): ret = True try: if is_verbose(): inform("Checking whether %s is installed..." % JNeuroMLEngine.name, indent=1) FNULL = open(os.devnull, 'w') jnml = JNeuroMLEngine.get_executable() r = check_output([jnml, '-v'], verbosity=2, env=JNeuroMLEngine.get_environment()) ret = '%s' % r.split()[1] if is_verbose(): inform("%s %s is installed..." % (JNeuroMLEngine.name, ret), indent=2) except OSError as err: inform("Couldn't execute/import jNeuroML: ", err, indent=1) ret = False return ret
def is_installed(version): ret = True try: if is_verbose(): inform("Checking whether %s is installed..." % JNeuroMLEngine.name, indent=1) FNULL = open(os.devnull, 'w') r = check_output(['jnml' if os.name != 'nt' else 'jnml.bat', '-v'], verbosity=2) ret = '%s'%r.split()[1] except OSError: ret = False return ret
def is_installed(version): PyNestEngine.environment_vars = NestEngine.get_nest_environment() ret = True try: ret_str = check_output( ['python -c "import nest; print(nest.version())"'], shell=True, verbosity=2) ret = len(ret_str) > 0 if ret: ret_str = ret_str.strip().split('\n')[-1] #print('NEST info: %s; <<%s>>'%(ret, ret_str)) if 'Version' in ret_str: ret = 'v%s' % ret_str.split('Version')[-1].split()[0] elif '-' in ret_str: ret = 'v%s' % ret_str.split('-')[-1].split()[0] else: ret = 'v%s' % ret_str.split()[-1] if ret and is_verbose(): inform("%s is correctly installed..." % (PyNestEngine.name), indent=2) if is_verbose(): inform("NEST is installed with Python support...", indent=2) inform("Env vars: %s" % PyNestEngine.environment_vars, indent=2) except Exception as err: inform("Couldn't import NEST into Python: ", err, indent=1) inform("NEST env vars: %s" % PyNestEngine.environment_vars, indent=1) ret = False return ret
def test_one(omt_fname): tally = parse_omt(omt_fname) inform('') if tally.all_passed(): inform("Test passed: %s" % omt_fname, overline='=', center=True) else: inform("Test failed: %s" % (omt_fname), underline='=', center=True) if is_verbose(): th = TallyHolder() th.add(tally) print('\n' + th.summary() + '\n') assert (tally.all_passed())
def is_installed(version): ret = True environment_vars = NestEngine.get_nest_environment() try: FNULL = open(os.devnull, 'w') check_output([environment_vars['NEST_HOME'] + 'bin/nest', '-v'], verbosity=is_verbose()) except OSError as err: inform("Couldn't execute NEST: ", err, indent=1) ret = False return ret
def is_installed(version): ret = True try: ret_str = sp.check_output(['python -c "import pyNN; print(pyNN.__version__)"'], shell=True,stderr=sp.STDOUT) ret = len(ret_str) > 0 ret = 'v%s'%ret_str.strip() if is_verbose(): inform("pyNN %s is correctly installed..." % ret, indent=2) except Exception as err: inform("Couldn't import pyNN into Python: ", err, indent=1) ret = False return ret
def is_installed(version): ret = False try: import brian if is_verbose(): inform("Brian version %s is correctly installed..." % brian.__version__, indent=2) ret = 'v%s' % brian.__version__ except Exception as err: inform("Couldn't import Brian into Python: ", err, indent=1) ret = False return ret
def is_installed(version): ret = True try: inform("Checking whether %s is installed..." % PyNRNEngine.name, indent=1, verbosity=2) ### Prints to stderr!! #ret_str = check_output(['python -c "import neuron; print(neuron.h.nrnversion())"'], shell=True, verbosity=2) import neuron ret_str = neuron.h.nrnversion() ret = 'v%s'%ret_str.split()[3] if is_verbose(): inform("PyNEURON version %s is correctly installed..." % ret, indent=2) except Exception as err: inform("Couldn't import NEURON into Python: ", err, indent=1) ret = False return ret
def is_installed(version): if is_verbose(): inform("Checking whether %s is installed..." % PyNNNestEngine.name, indent=1) return PyNNEngine.is_installed(None) and PyNestEngine.is_installed(None)
def is_installed(version): if is_verbose(): inform("Checking whether %s is installed..." % JNeuroMLMooseEngine.name, indent=1) return JNeuroMLEngine.is_installed(None) and MooseEngine.is_installed(None)
def test_all(do_not_run=False, only_this_engine=None, include_temp_tests=False): cwd = Path(getcwd()) all_omts = [p.as_posix() for p in cwd.glob('**/*.omt')] if include_temp_tests: all_omts += [p.as_posix() for p in cwd.glob('**/*.omt_')] th = TallyHolder() if environ.get('TRAVIS'): if not environ.get('OMV_ENGINE'): tallies = [parse_omt(t) for t in all_omts] else: engine = environ.get('OMV_ENGINE').lower() tallies = [ parse_omt(t) for t in all_omts if load_yaml(t)['engine'].lower() == engine ] elif only_this_engine: inform('Only running tests for engine: %s' % only_this_engine) tallies = [ parse_omt(t) for t in all_omts if load_yaml(t)['engine'].lower() == only_this_engine.lower() ] else: tallies = [] failed = 0 for i in range(len(all_omts)): t = all_omts[i] inform('') tally = parse_omt(t, do_not_run) if not tally.all_passed(): failed += 1 if not do_not_run: inform('') inform('') inform(' [ Test %i of %i complete - failed so far: %s ]' % (i + 1, len(all_omts), failed)) tallies.append(tally) tallies.sort() if not do_not_run: for t in tallies: th.add(t) results = [] for i in range(len(tallies)): t = tallies[i] results.append(t.all_passed()) inform('') inform("%i test(s) run" % len(tallies), overline='-', underline='-', center=True) inform('') if len(results) == 0: inform("No tests found!", underline='=', center=True) elif all(results): inform("All tests passing!", underline='=', center=True) else: failed = [trim_path(t.omt) for t in tallies if not t.all_passed()] inform("Some test(s) failed: ", failed, underline='=') if is_verbose(): print('\n' + th.summary() + '\n') assert len(results) > 0 assert all(results) else: engs = {} tot_tests = 0 for t in tallies: if not t.engine in engs: engs[t.engine] = 0 engs[t.engine] += 1 tot_tests += 1 inform('') for e in sorted(engs): inform(' Engine %s has %s tests' % (e, engs[e])) inform('') inform(' %s OMV tests in total' % (tot_tests)) inform('')