def test_pheno_objects_shh_2():
"""
Equivalent to above, using convenience method
"""
objs = get_objects_for_subject(subject=HUMAN_SHH,
object_category='phenotype')
print(objs)
assert HOLOPROSENCEPHALY in objs
assert len(objs) > 50
def _get_node_info(id_list: Iterable[str]) -> Iterable[str]:
"""
Given a list of ids of unknown type, determine which ids
are phenotypes, if the id is not a phenotype, check to
see if it is associated with one or more phenotypes via
the 'has_phenotype' relation
:param id_list: list of ids of any type (curies as strings)
:return: list of phenotypes (curies as strings)
"""
pheno_list = []
node_types = get_id_type_map(id_list)
for node in id_list:
if 'phenotype' in node_types[node]:
pheno_list.append(node)
else:
phenotypes = get_objects_for_subject(
subject=node,
object_category='phenotype',
relation='RO:0002200')
pheno_list = pheno_list + phenotypes
return pheno_list
