def test_gorule46():
config = assocparser.AssocParserConfig(ontology=ontology)
a = ["blah"] * 15
a[0] = "PomBase"
a[1] = "SPAC25B8.17"
a[3] = ""
a[4] = "GO:0051260" # Self-binding, yes
a[7] = "PomBase:SPAC25B8.17"
a[8] = "P"
assoc = gafparser.to_association(a).associations[0]
test_result = qc.GoRule46().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.with_support_from = ["PomBase:BLAH123"]
test_result = qc.GoRule46().test(assoc, config)
assert test_result.result_type == qc.ResultType.WARNING
assoc.evidence.with_support_from = [
"PomBase:SPAC25B8.17", "PomBase:BLAH123"
]
test_result = qc.GoRule46().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS
assoc.object.id = "GO:0000123"
# Not in a self-binding mode
test_result = qc.GoRule46().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS
# Test no ontology should just pass
assoc.object.id = "GO:0051260"
test_result = qc.GoRule46().test(assoc, assocparser.AssocParserConfig())
assert test_result.result_type == qc.ResultType.PASS
def test_gorule46():
config = all_rules_config(ontology=ontology)
# Self-binding, yes
assoc = make_annotation(db="PomBase",
db_id="SPAC25B8.17",
goid="GO:0051260",
withfrom="PomBase:SPAC25B8.17").associations[0]
test_result = qc.GoRule46().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS
assoc.evidence.with_support_from = association.ConjunctiveSet.str_to_conjunctions(
"PomBase:BLAH123")
test_result = qc.GoRule46().test(assoc, config)
assert test_result.result_type == qc.ResultType.WARNING
assoc.evidence.with_support_from = association.ConjunctiveSet.str_to_conjunctions(
"PomBase:SPAC25B8.17|PomBase:BLAH123")
test_result = qc.GoRule46().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS
assoc.object.id = Curie.from_str("GO:0000123")
# Not in a self-binding mode
test_result = qc.GoRule46().test(assoc, config)
assert test_result.result_type == qc.ResultType.PASS
# Test no ontology should just pass
assoc.object.id = Curie.from_str("GO:0051260")
test_result = qc.GoRule46().test(assoc, all_rules_config())
assert test_result.result_type == qc.ResultType.PASS
def test_gorule46():
config = assocparser.AssocParserConfig(ontology=ontology)
a = ["blah"] * 16
a[1] = "SPAC25B8.17"
a[4] = "GO:0051260" # Self-binding, yes
a[7] = "SPAC25B8.17"
test_result = qc.GoRule46().test(a, config)
assert test_result.result_type == qc.ResultType.PASS
a[7] = "BLAH123"
test_result = qc.GoRule46().test(a, config)
assert test_result.result_type == qc.ResultType.WARNING
a[7] = "SPAC25B8.17|BLAH123"
test_result = qc.GoRule46().test(a, config)
assert test_result.result_type == qc.ResultType.PASS
a[4] = "GO:0000123"
# Not in a self-binding mode
test_result = qc.GoRule46().test(a, config)
assert test_result.result_type == qc.ResultType.PASS