def optimizeLambda(self, marginal, deltaRHS):
"""
Compute the lambda values
Parameters
----------
marginal : int
The indice of the perturbed marginal.
deltaRHS : sequence of float of dim 2
The values of the mean and variance + mean^2
"""
# define the optimization function which the Lagrange function
# and using the gradient and the hessian
optimFunc = ot.PythonFunction(
2,
1,
lambda lamb: [self.H(marginal, lamb, deltaRHS)],
gradient=lambda lamb: self.gradH(marginal, lamb, deltaRHS),
hessian=lambda lamb: self.hessianH(marginal, lamb))
# define the optimization problem
optimPb = ot.OptimizationProblem(
optimFunc, ot.Function(), ot.Function(),
ot.Interval([-1000.0] * 2, [1000.0] * 2))
# solve the problem using SLSQP from NLopt
optim = ot.NLopt(optimPb, 'LD_SLSQP')
optim.setStartingPoint([0, 0])
optim.run()
# return the lambda values, solution of the problem
return optim.getResult().getOptimalPoint()
def run(self):
"""
Compute the Sobol indices with the chosen algorithm.
"""
# create the Function which computes the POD for a given
# realization and for all defect sizes.
if self._podType == "kriging":
self._PODaggr = ot.Function(
PODaggrKriging(self._POD, self._dim, self._defectSizes,
self._detectionBoxCox))
elif self._podType == "chaos":
self._PODaggr = ot.Function(
PODaggrChaos(self._POD, self._dim, self._defectSizes,
self._detectionBoxCox, self._simulationSize))
input_design = ot.SobolIndicesExperiment(self._distribution, self._N,
False).generate()
output_design = self._PODaggr(input_design)
# remove the output marginal when the variance is null because it causes
# a failure. Must remove also the associated defect sizes.
selected_marginal_index = []
for index_output in range(output_design.getDimension()):
if output_design.getMarginal(
index_output)[:self._N].computeCovariance()[0, 0] != 0:
selected_marginal_index.append(index_output)
if len(selected_marginal_index) != output_design.getDimension():
self.setDefectSizes(self._defectSizes[selected_marginal_index])
selected_output_design = np.array(
output_design)[:, selected_marginal_index]
logging.warning("Warning : some output variances are null. " + \
"Only the following defect sizes are taken into " + \
"account : {}".format(self._defectSizes))
else:
selected_output_design = output_design
if self._method == "Saltelli":
self._sa = ot.SaltelliSensitivityAlgorithm(input_design,
selected_output_design,
self._N)
elif self._method == "Martinez":
self._sa = ot.MartinezSensitivityAlgorithm(input_design,
selected_output_design,
self._N)
elif self._method == "Jansen":
self._sa = ot.JansenSensitivityAlgorithm(input_design,
selected_output_design,
self._N)
elif self._method == "MauntzKucherenko":
self._sa = ot.MauntzKucherenkoSensitivityAlgorithm(
input_design, selected_output_design, self._N)
self._sa.setUseAsymptoticDistribution(True)
def _exec(self, X):
f = ot.Function(
ot.PiecewiseLinearEvaluation(
[x[0] for x in self.getInputMesh().getVertices()], X))
outputValues = ot.Sample(0, 1)
for t in self.getOutputMesh().getVertices():
kernel = ot.Normal(t[0], 0.05)
def pdf(X):
return [kernel.computePDF(X)]
weight = ot.Function(ot.PythonFunction(1, 1, pdf))
outputValues.add(
self.algo_.integrate(weight * f, kernel.getRange()))
return outputValues
def _exec(self, X):
inputTG = X.getTimeGrid()
inputValues = X.getValues()
f = ot.Function(
ot.PiecewiseLinearEvaluation([x[0] for x in inputTG.getVertices()],
inputValues))
outputValues = ot.Sample(0, 1)
for t in self.outputGrid_.getVertices():
kernel = ot.Normal(t[0], 0.05)
def pdf(X):
return [kernel.computePDF(X)]
weight = ot.Function(ot.PythonFunction(1, 1, pdf))
outputValues.add(
self.algo_.integrate(weight * f, kernel.getRange()))
return ot.Field(self.outputGrid_, outputValues)
def __new__(self, path_fmu=None, inputs_fmu=None, outputs_fmu=None,
inputs=None, outputs=None, n_cpus=None, kind=None,
initialization_script=None, final_time=None):
lowlevel = OpenTURNSFMUFunction(
path_fmu=path_fmu, inputs_fmu=inputs_fmu, outputs_fmu=outputs_fmu,
inputs=inputs, n_cpus=n_cpus, outputs=outputs, kind=kind,
initialization_script=initialization_script, final_time=final_time)
highlevel = ot.Function(lowlevel)
# highlevel._model = lowlevel.model
return highlevel
def __init__(self, simulateur, annee, S, D):
"""
Crée un modèle de pension probabiliste.
Paramètres :
simulateur : un SimulateurRetraite
annee : un flottant, l'année de calcul de P
S : un flottant, le solde financier en part de PIB
D : un flottant positif, le montant des dépenses de retraites
en part de PIB
Description :
Crée un modèle de pension probabiliste pour le
ratio (pension moyenne) / (salaire moyen).
Les entrées du modèle sont "As", "F", "TauC"
et la sortie est "P".
Les paramètres S et D sont fixés par le constructeur
de la classe au moment de la création de l'objet.
* S : le solde financier du système de retraites (% PIB)
* D : le montant des dépenses (% PIB)
* As : l'âge moyen de départ à la retraite défini par l'utilisateur
* F : facteur d'élasticité de report de l'âge de départ
(par exemple F=0.5)
* TauC : le taux de chômage (par exemple TauC = 4.5)
Les distributions des variables sont ot.Uniform
et indépendantes.
Exemple :
S = 0.0
D = 0.14
annee = 2050
modele = ModelePensionProbabiliste(simulateur, annee, S, D)
fonction = modele.getFonction()
inputDistribution = modele.getInputDistribution()
"""
# Crée le modèle de pension complet : entrées = (S, D, As, F, TauC)
modelePension = ot.Function(FonctionPension(simulateur, annee))
# Crée le modèle réduit à partir du modèle complet : entrées = (As, F, TauC)
indices = ot.Indices([0, 1])
referencePoint = ot.Point([S, D])
self.fonction = ot.ParametricFunction(modelePension, indices, referencePoint)
# Distribution
As = ot.Uniform(62.0, 66.0)
F = ot.Uniform(0.25, 0.75)
TauC = ot.Uniform(4.5, 10.0)
self.inputDistribution = ot.ComposedDistribution([As, F, TauC])
self.inputDistribution.setDescription(["As", "F", "TauC"])
return
def numericalmathfunction(*args, **kwargs):
wrapper_instance = wrapper(*args, **kwargs)
func = ot.Function(wrapper_instance)
# Enable cache
if self.enableCache:
func = ot.MemoizeFunction(func)
func.disableHistory()
# Update __doc__ of the function
if self.doc is None:
# Inherit __doc__ from ParallelWrapper.
func.__doc__ = wrapper.__doc__
else:
func.__doc__ = self.doc
# Add the kwargs as attributes of the function for reference
# purposes.
func.__dict__.update(kwargs)
func.__dict__.update(wrapper_instance.__dict__)
return func
def build(self, dataX, dataY):
logLikelihood = ot.Function(ReducedLogLikelihood(dataX, dataY))
xlb = np.linspace(self.lambdaMin_, self.lambdaMax_, num=500)
lambdax = [logLikelihood([x])[0] for x in xlb]
algo = ot.TNC(logLikelihood)
algo.setStartingPoint([xlb[np.array(lambdax).argmax()]])
algo.setBoundConstraints(ot.Interval(self.lambdaMin_, self.lambdaMax_))
algo.setOptimizationProblem(
ot.BoundConstrainedAlgorithmImplementationResult.MAXIMIZATION)
algo.run()
optimalLambda = algo.getResult().getOptimizer()[0]
# graph
optimalLogLikelihood = algo.getResult().getOptimalValue()
graph = logLikelihood.draw(0.01 * optimalLambda, 10.0 * optimalLambda)
c = ot.Cloud([[optimalLambda, optimalLogLikelihood]])
c.setColor("red")
c.setPointStyle("circle")
graph.add(c)
return ot.BoxCoxTransform([optimalLambda]), graph
def _exec(self, X):
Y = [X[0] + X[1]]
return Y
F = FUNC()
print(('in_dim=' + str(F.getInputDimension()) + ' out_dim=' +
str(F.getOutputDimension())))
print((F((10, 5))))
print((F(((10, 5), (6, 7)))))
# Instance creation
myFunc = ot.Function(F)
# Copy constructor
newFunc = ot.Function(myFunc)
print(('myFunc input dimension= ' + str(myFunc.getInputDimension())))
print(('myFunc output dimension= ' + str(myFunc.getOutputDimension())))
inPt = ot.Point(2, 2.)
print((repr(inPt)))
outPt = myFunc(inPt)
print((repr(outPt)))
outPt = myFunc((10., 11.))
print((repr(outPt)))
def __new__(self, algo, in_dim, out_dim):
python_function = SklearnPyFunction(algo, in_dim, out_dim)
return ot.Function(python_function)
ot.TESTPREAMBLE()
ot.RandomGenerator.SetSeed(0)
def progress(percent):
sys.stderr.write('-- progress=' + str(percent) + '%\n')
def stop():
sys.stderr.write('-- stop?\n')
return False
# We create a numerical math function
myFunction = ot.Function(
["E", "F", "L", "I"], ["d"], ["-F*L^3/(3*E*I)"])
dim = myFunction.getInputDimension()
# We create a normal distribution point of dimension 1
mean = [0.0] * dim
# E
mean[0] = 50.0
# F
mean[1] = 1.0
# L
mean[2] = 10.0
# I
mean[3] = 5.0
sigma = [1.0] * dim
R = ot.IdentityMatrix(dim)
print('f(x^)=', printPoint(result.getOptimalValue(), 4))
print('lambda^=', printPoint(result.computeLagrangeMultipliers(), 4))
# bounds
linear = ot.SymbolicFunction(
['x1', 'x2', 'x3', 'x4'], ['x1+2*x2-3*x3+4*x4'])
dim = 4
startingPoint = [0.] * dim
bounds = ot.Interval([-3.] * dim, [5.] * dim)
for minimization in [True, False]:
problem = ot.OptimizationProblem(
linear, ot.Function(), ot.Function(), bounds)
problem.setMinimization(minimization)
algo = ot.Cobyla(problem)
algo.setMaximumEvaluationNumber(150)
algo.setStartingPoint(startingPoint)
print('algo=', algo)
algo.run()
result = algo.getResult()
print('x^=', printPoint(result.getOptimalPoint(), 4))
print('f(x^)=', printPoint(result.getOptimalValue(), 4))
print('lambda^=', printPoint(result.computeLagrangeMultipliers(), 4))
# empty problem
algo = ot.Cobyla()
try:
algo.run()
#! /usr/bin/env python
from __future__ import print_function
import openturns as ot
ot.TESTPREAMBLE()
# Instance creation
myFunc = ot.SymbolicFunction(
['x1', 'x2'], ['x1*sin(x2)', 'cos(x1+x2)', '(x2+1)*exp(x1-2*x2)'])
# Copy constructor
newFunc = ot.Function(myFunc)
print("myFunc=" + repr(myFunc))
print("myFunc input parameter(s)=")
for i in range(myFunc.getInputDimension()):
print(myFunc.getInputDescription()[i])
print("myFunc output parameter(s) and marginal(s)=")
for i in range(myFunc.getOutputDimension()):
print(myFunc.getOutputDescription()[i])
print("Marginal function", i, "=", repr(myFunc.getMarginal(i)))
try:
print(ot.Function() == None)
except TypeError:
# swig<4
print(False)
# Fix numerical precision
ot.PlatformInfo.SetNumericalPrecision(2)
# Kriging use case
spatialDimension = 2
# Learning data
levels = [8, 5]
box = ot.Box(levels)
inputSample = box.generate()
# Scale each direction
inputSample *= 10
# Define model
model = ot.Function(['x', 'y'], ['z'], ['cos(0.5*x) + sin(y)'])
outputSample = model(inputSample)
# 2) Definition of exponential model
covarianceModel = ot.SquaredExponential([1.988, 0.924], [3.153])
# 3) Basis definition
basisCollection = ot.BasisCollection(
1,
ot.ConstantBasisFactory(spatialDimension).build())
# Kriring algorithm
algo = ot.KrigingAlgorithm(inputSample, outputSample, covarianceModel,
basisCollection)
algo.run()
result = algo.getResult()
myStudy.add('beta', beta)
# Create an analytical Function
input = ot.Description(3)
input[0] = 'a'
input[1] = 'b'
input[2] = 'c'
output = ot.Description(3)
output[0] = 'squaresum'
output[1] = 'prod'
output[2] = 'complex'
formulas = ot.Description(output.getSize())
formulas[0] = 'a+b+c'
formulas[1] = 'a-b*c'
formulas[2] = '(a+2*b^2+3*c^3)/6'
analytical = ot.Function(input, output, formulas)
analytical.setName('analytical')
myStudy.add('analytical', analytical)
# Create a TaylorExpansionMoments algorithm
antecedent = ot.RandomVector(
ot.IndependentCopula(analytical.getInputDimension()))
antecedent.setName('antecedent')
composite = ot.RandomVector(analytical, antecedent)
composite.setName('composite')
taylorExpansionsMoments = ot.TaylorExpansionMoments(composite)
taylorExpansionsMoments.setName('taylorExpansionsMoments')
taylorExpansionsMoments.getMeanFirstOrder()
taylorExpansionsMoments.getMeanSecondOrder()
taylorExpansionsMoments.getCovariance()
print("Relative error: ", result.getRelativeError())
print("Residual error: ", result.getResidualError())
print("Constraint error: ", result.getConstraintError())
# %%
# Solving problem with bounds, using LBFGS strategy
# ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
#
# In the following example, the input variables will be bounded so the function global optimal point is not included in the search interval.
#
# The problem will be solved using LBFGS strategy, which allows the user to limit the amount of memory used by the optimization process.
# %%
# Define the bounds and the problem
bounds = ot.Interval([0.0, 0.0], [0.8, 2.0])
boundedProblem = ot.OptimizationProblem(rosenbrock, ot.Function(),
ot.Function(), bounds)
# %%
# Define the Dlib algorithm
boundedAlgo = ot.Dlib(boundedProblem, "lbfgs")
boundedAlgo.setMaxSize(15) # Default value for LBFGS' maxSize parameter is 10
startingPoint = [0.5, 1.5]
boundedAlgo.setStartingPoint(startingPoint)
boundedAlgo.run()
# %%
# Retrieve results
result = boundedAlgo.getResult()
#!/usr/bin/env python from __future__ import print_function, division import openturns as ot # # Physical model # limitState = ot.Function(['u1', 'u2'], ['g'], ['u1-u2']) dim = limitState.getInputDimension() # # Probabilistic model # mean = ot.Point(dim, 0.0) mean[0] = 7. mean[1] = 2. sigma = ot.Point(dim, 1.0) R = ot.IdentityMatrix(dim) myDistribution = ot.Normal(mean, sigma, R) # # Limit state # vect = ot.RandomVector(myDistribution) output = ot.RandomVector(limitState, vect)
study.save()
# %%
# Create a new study associated to the same file
study = ot.Study()
study.setStorageManager(ot.XMLStorageManager(fileName))
# %%
# Load the file and all its objects
study.load()
# %%
# Check the content of the myStudy
print("Study = ", study)
# %%
# List names of stored objects
study.printLabels()
# %%
# Check our 'distribution' labelled object was loaded
study.hasObject('distribution')
# %%
# Load the objects; we must create a void object of the desired type (or parent type)
distribution2 = ot.Normal()
function2 = ot.Function()
study.fillObject('distribution', distribution2)
study.fillObject('function', function2)
str(distribution2), str(function2)
print(" -- Evaluation number = ", result.getEvaluationNumber())
print(" -- Absolute error = {:.6e}".format(result.getAbsoluteError()))
print(" -- Relative error = {:.6e}".format(result.getRelativeError()))
print(" -- Residual error = {:.6e}".format(result.getResidualError()))
print(" -- Constraint error = {:.6e}".format(
result.getConstraintError()))
# Define the problems based on Rastrigin function
rastrigin = ot.SymbolicFunction(
['x1', 'x2'], ['20 + x1^2 - 10*cos(2*pi_*x1) + x2^2 - 10*cos(2*pi_*x2)'])
unboundedProblem = ot.OptimizationProblem(rastrigin)
notConstrainingBounds = ot.Interval([-5.0, -5.0], [3.0, 2.0])
notConstrainingBoundsProblem = ot.OptimizationProblem(rastrigin, ot.Function(),
ot.Function(),
notConstrainingBounds)
constrainingBounds = ot.Interval([-1.0, -2.0], [5.0, -0.5])
constrainingBoundsProblem = ot.OptimizationProblem(rastrigin, ot.Function(),
ot.Function(),
constrainingBounds)
boundedPref = [0.0, -1.0]
unboundedPref = [0.0, 0.0]
## GLOBAL ALGORITHM ##
# Non-contraining bounds Global
notConstrainingBoundsGlobal = ot.Dlib(notConstrainingBoundsProblem, "Global")
tensorEval = ot.CanonicalTensorEvaluation(factoryCollection, nk, rank)
for r in range(rank):
for j in range(dim):
coefs = ot.Normal(nk[j]).getRealization()
tensorEval.setCoefficients(r, j, coefs)
tensorGrad = ot.CanonicalTensorGradient(tensorEval)
x = [1.0] * dim
print(x)
df = tensorGrad.gradient(x) * ot.Point([1.0])
print('df=', df)
f = ot.Function(tensorEval)
fx = f(x)[0]
eps = 1e-5
dffd = [0.0] * dim
for i in range(dim):
xp = ot.Point(x)
xp[i] += eps
fp = f(xp)
dffd[i] = (f(xp)[0] - fx) / eps
print('dffd', dffd)
# print(tensor)
ottest.assert_almost_equal(df, dffd, 1e-4)
#! /usr/bin/env python
from __future__ import print_function
import openturns as ot
eps = 0.4
# Instance creation
myFunc = ot.Function(['x1', 'x2'], ['f1', 'f2', 'f3'],
['x1*sin(x2)', 'cos(x1+x2)', '(x2+1)*exp(x1-2*x2)'])
center = ot.Point(myFunc.getInputDimension())
for i in range(center.getDimension()):
center[i] = 1.0 + i
myTaylor = ot.QuadraticTaylor(center, myFunc)
myTaylor.run()
responseSurface = ot.Function(myTaylor.getResponseSurface())
print("myTaylor=", repr(myTaylor))
print("responseSurface=", repr(responseSurface))
print("myFunc(", repr(center), ")=", repr(myFunc(center)))
print("responseSurface(", repr(center), ")=", repr(responseSurface(center)))
inPoint = ot.Point(center)
inPoint[0] += eps
inPoint[1] -= eps / 2
print("myFunc(", repr(inPoint), ")=", repr(myFunc(inPoint)))
print("responseSurface(", repr(inPoint), ")=", repr(responseSurface(inPoint)))
#! /usr/bin/env python
from __future__ import print_function
import openturns as ot
import os
ot.TESTPREAMBLE()
f = ot.Function()
# load
study = ot.Study()
study.setStorageManager(ot.XMLStorageManager('pyf.xml'))
study.load()
study.fillObject('f', f)
x = [4, 5]
print(f(x))
os.remove('pyf.xml')
import openturns as ot
import otrobopt
from matplotlib import pyplot as plt
from openturns.viewer import View
thetaDist = ot.Normal(2.0, 0.1)
if 'VarianceMeasure' == 'WorstCaseMeasure':
thetaDist = ot.Uniform(-1.0, 4.0)
elif 'ChanceMeasure' in 'VarianceMeasure':
thetaDist = ot.Normal(1.0, 1.0)
f_base = ot.Function(['x', 'theta'], ['y'], ['x*theta'])
f = ot.Function(f_base, [1], thetaDist.getMean())
if 'VarianceMeasure' == 'JointChanceMeasure':
measure = otrobopt.JointChanceMeasure(f, thetaDist, ot.GreaterOrEqual(),
0.95)
elif 'VarianceMeasure' == 'IndividualChanceMeasure':
measure = otrobopt.IndividualChanceMeasure(f, thetaDist,
ot.GreaterOrEqual(), [0.95])
elif 'VarianceMeasure' == 'MeanStandardDeviationTradeoffMeasure':
measure = otrobopt.MeanStandardDeviationTradeoffMeasure(
f, thetaDist, [0.8])
elif 'VarianceMeasure' == 'QuantileMeasure':
measure = otrobopt.QuantileMeasure(f, thetaDist, 0.99)
else:
measure = otrobopt.VarianceMeasure(f, thetaDist)
N = 10
experiment = ot.LHSExperiment(N)
factory = otrobopt.MeasureFactory(experiment)
import openturns as ot
from matplotlib import pyplot as plt
from openturns.viewer import View
# Create a function
f = ot.Function(["x", "y"], ["z"], ["exp(-sin(cos(y)^2*x^2+sin(x)^2*y^2))"])
# Generate the data for the curves to be drawn
nX = 75
nY = 75
inputData = ot.Box([nX, nY]).generate()
inputData *= [10.0] * 2
inputData += [-5.0] * 2
data = f(inputData)
levels = [(0.5 + i) / 5 for i in range(5)]
# Create an empty graph
graph = ot.Graph("Complex iso lines", "u1", "u2", True, "")
# Create the contour
contour = ot.Contour(nX + 2, nY + 2, data)
contour.setLevels(levels)
# Then, draw it
graph.add(contour)
fig = plt.figure(figsize=(4, 4))
plt.suptitle("Complex iso lines example")
axis = fig.add_subplot(111)
axis.set_xlim(auto=True)
View(graph, figure=fig, axes=[axis], add_legend=False)
data[4] = point
point[0] = -0.25
point[1] = -0.25
data[5] = point
point[0] = -0.25
point[1] = 0.25
data[6] = point
point[0] = 0.25
point[1] = -0.25
data[7] = point
point[0] = 0.25
point[1] = 0.25
data[8] = point
myLeastSquares = ot.LinearLeastSquares(data, myFunc)
myLeastSquares.run()
responseSurface = ot.Function(myLeastSquares.getMetaModel())
print("myLeastSquares=", repr(myLeastSquares))
print("responseSurface=", repr(responseSurface))
inPoint = ot.Point(myFunc.getInputDimension(), 0.1)
print("myFunc(", repr(inPoint), ")=", repr(myFunc(inPoint)))
print("responseSurface(", repr(inPoint), ")=", repr(responseSurface(inPoint)))
dataOut = myFunc(data)
myLeastSquares = ot.LinearLeastSquares(data, dataOut)
myLeastSquares.run()
responseSurface = ot.Function(myLeastSquares.getMetaModel())
print("myLeastSquares=", repr(myLeastSquares))
print("responseSurface=", repr(responseSurface))
inPoint = ot.Point(myFunc.getInputDimension(), 0.1)
print("myFunc(", repr(inPoint), ")=", repr(myFunc(inPoint)))
print("responseSurface(", repr(inPoint), ")=", repr(responseSurface(inPoint)))
#! /usr/bin/env python
from __future__ import print_function
import openturns as ot
eps = 0.4
# Instance creation
myFunc = ot.SymbolicFunction(
['x1', 'x2'], ['x1*sin(x2)', 'cos(x1+x2)', '(x2+1)*exp(x1-2*x2)'])
center = ot.Point(myFunc.getInputDimension())
for i in range(center.getDimension()):
center[i] = 1.0 + i
myTaylor = ot.QuadraticTaylor(center, myFunc)
myTaylor.run()
responseSurface = ot.Function(myTaylor.getMetaModel())
print("myTaylor=", repr(myTaylor))
print("responseSurface=", repr(responseSurface))
print("myFunc(", repr(center), ")=", repr(myFunc(center)))
print("responseSurface(", repr(center), ")=", repr(responseSurface(center)))
inPoint = ot.Point(center)
inPoint[0] += eps
inPoint[1] -= eps / 2
print("myFunc(", repr(inPoint), ")=", repr(myFunc(inPoint)))
print("responseSurface(", repr(inPoint), ")=", repr(responseSurface(inPoint)))
# Create a Beta distribution from the one stored in the Study
beta = ot.Beta()
myStudy.fillObject('beta', beta)
print('beta = ', beta)
randomGeneratorState = ot.RandomGeneratorState()
myStudy.fillObject('randomGeneratorState', randomGeneratorState)
print('randomGeneratorState = ', randomGeneratorState)
# Create an analytical Function from the one stored in the
# Study
analytical = ot.Function()
myStudy.fillObject('analytical', analytical)
print('analytical = ', analytical)
print('analytical.outputDescription=', analytical.getOutputDescription())
# Create a GeneralLinearModelResult from the one stored in the Study
generalizedLinearModelResult = ot.GeneralLinearModelResult()
myStudy.fillObject('generalizedLinearModelResult',
generalizedLinearModelResult)
print('generalizedLinearModelResult = ', generalizedLinearModelResult)
# KDTree
kDTree = ot.KDTree()
myStudy.fillObject('kDTree', kDTree)
def __init__(self, strategy, degree, distributions, N_quad=None, sample=None,
stieltjes=True, sparse_param={}):
"""Generate truncature and projection strategies.
Allong with the strategies the sample is storred as an attribute.
:attr:`sample` as well as corresponding weights: :attr:`weights`.
:param str strategy: Least square or Quadrature ['LS', 'Quad', 'SparseLS'].
:param int degree: Polynomial degree.
:param distributions: Distributions of each input parameter.
:type distributions: lst(:class:`openturns.Distribution`)
:param array_like sample: Samples for least square
(n_samples, n_features).
:param bool stieltjes: Wether to use Stieltjes algorithm for the basis.
:param dict sparse_param: Parameters for the Sparse Cleaning Truncation
Strategy and/or hyperbolic truncation of the initial basis.
- **max_considered_terms** (int) -- Maximum Considered Terms,
- **most_significant** (int), Most Siginificant number to retain,
- **significance_factor** (float), Significance Factor,
- **hyper_factor** (float), factor for hyperbolic truncation
strategy.
"""
# distributions
self.in_dim = len(distributions)
self.dist = ot.ComposedDistribution(distributions)
self.sparse_param = sparse_param
if 'hyper_factor' in self.sparse_param:
enumerateFunction = ot.EnumerateFunction(self.in_dim, self.sparse_param['hyper_factor'])
else:
enumerateFunction = ot.EnumerateFunction(self.in_dim)
if stieltjes:
# Tend to result in performance issue
self.basis = ot.OrthogonalProductPolynomialFactory(
[ot.StandardDistributionPolynomialFactory(
ot.AdaptiveStieltjesAlgorithm(marginal))
for marginal in distributions], enumerateFunction)
else:
self.basis = ot.OrthogonalProductPolynomialFactory(
[ot.StandardDistributionPolynomialFactory(margin)
for margin in distributions], enumerateFunction)
self.n_basis = enumerateFunction.getStrataCumulatedCardinal(degree)
# Strategy choice for expansion coefficient determination
self.strategy = strategy
if self.strategy == 'LS' or self.strategy == 'SparseLS': # least-squares method
self.sample = sample
else: # integration method
# redefinition of sample size
# n_samples = (degree + 1) ** self.in_dim
# marginal degree definition
# by default: the marginal degree for each input random
# variable is set to the total polynomial degree 'degree'+1
measure = self.basis.getMeasure()
if N_quad is not None:
degrees = [int(N_quad ** 0.25)] * self.in_dim
else:
degrees = [degree + 1] * self.in_dim
self.proj_strategy = ot.IntegrationStrategy(
ot.GaussProductExperiment(measure, degrees))
self.sample, self.weights = self.proj_strategy.getExperiment().generateWithWeights()
if not stieltjes:
transformation = ot.Function(ot.MarginalTransformationEvaluation(
[measure.getMarginal(i) for i in range(self.in_dim)],
distributions, False))
self.sample = transformation(self.sample)
self.pc = None
self.pc_result = None
algo.run()
print('algo=', algo)
algo.run()
result = algo.getResult()
print('x^=', printPoint(result.getOptimalPoint(), 4))
print('f(x^)=', printPoint(result.getOptimalValue(), 4))
print('lambda^=', printPoint(result.getLagrangeMultipliers(), 4))
# bounds
linear = ot.SymbolicFunction(['x1', 'x2', 'x3', 'x4'], ['x1+2*x2-3*x3+4*x4'])
dim = 4
startingPoint = [0.] * dim
bounds = ot.Interval([-3.] * dim, [5.] * dim)
for minimization in [True, False]:
problem = ot.OptimizationProblem(linear, ot.Function(), ot.Function(),
bounds)
problem.setMinimization(minimization)
algo = ot.Cobyla(problem)
algo.setMaximumIterationNumber(150)
algo.setStartingPoint(startingPoint)
print('algo=', algo)
algo.run()
result = algo.getResult()
print('x^=', printPoint(result.getOptimalPoint(), 4))
print('f(x^)=', printPoint(result.getOptimalValue(), 4))
print('lambda^=', printPoint(result.getLagrangeMultipliers(), 4))
#! /usr/bin/env python
from __future__ import print_function
import openturns as ot
eps = 0.2
# Instance creation
myFunc = ot.SymbolicFunction(
['x1', 'x2'], ['x1*sin(x2)', 'cos(x1+x2)', '(x2+1)*exp(x1-2*x2)'])
center = ot.Point(myFunc.getInputDimension())
for i in range(center.getDimension()):
center[i] = 1.0 + i
myTaylor = ot.LinearTaylor(center, myFunc)
myTaylor.run()
responseSurface = ot.Function(myTaylor.getResponseSurface())
print("myTaylor=", repr(myTaylor))
print("responseSurface=", repr(responseSurface))
print("myFunc(", repr(center), ")=", repr(myFunc(center)))
print("responseSurface(", repr(center), ")=", repr(responseSurface(center)))
inPoint = ot.Point(center)
inPoint[0] += eps
inPoint[1] -= eps / 2
print("myFunc(", repr(inPoint), ")=", repr(myFunc(inPoint)))
print("responseSurface(", repr(inPoint), ")=", repr(responseSurface(inPoint)))