def write_cld_image(self,
p_cldimages,
p_clddatabandsselected,
cld_image_filename,
use_filenames=False):
il = []
for c in p_clddatabandsselected:
band = self._plugin.get_cld_algoindex_from_bandname(c)
il.append(p_cldimages[band])
param_concat = {"il": il, "out": "tmp.tif:uint8"}
if not use_filenames:
concat_app = OtbAppHandler("ConcatenateMaskImages",
param_concat,
write_output=False)
else:
concat_app = OtbAppHandler("ConcatenateImages",
param_concat,
write_output=False)
param_bin_concat = {
"im":
concat_app.getoutput().get("out"),
"out":
cld_image_filename + ":uint8" +
file_utils.get_extended_filename_write_image_file_standard()
}
bin_concat_app = OtbAppHandler("BinaryConcatenate",
param_bin_concat,
write_output=True)
def generate_sat_images(self, working_dir):
"""
:return:
"""
# *******************************************************************************************************
# IPSAT Sub image pipeline connection
# *******************************************************************************************************
out_concatenate = os.path.join(working_dir, "SubSatVector.tif")
param_concatenate = {"il": self._satmasksublist,
"out": out_concatenate + ":uint8"
}
concat_app = OtbAppHandler("ConcatenateDoubleImages", param_concatenate)
self._subsatimage = concat_app.getoutput().get("out")
# *******************************************************************************************************
# L2SAT image pipeline connection
# *******************************************************************************************************
l_BandsDefinitions = self._plugin.BandsDefinitions
l_ListOfL2Resolution = l_BandsDefinitions.ListOfL2Resolution
# At L2 resolution
l_NbL2Res = len(l_ListOfL2Resolution)
for i in range(l_NbL2Res):
str_res = l_ListOfL2Resolution[i]
out_concatenate = os.path.join(working_dir, "L2SATVector_{}.tif".format(str_res))
param_concatenate = {"il": self._l2satimagelist[i],
"out": out_concatenate + ":uint8"
}
sat_image = OtbAppHandler("ConcatenateDoubleImages", param_concatenate, write_output=False)
self._pipeline.add_otb_app(sat_image)
self._l2satmasklist.append(sat_image.getoutput().get("out"))
def run(self, dict_of_input, dict_of_output):
LOGGER.info("Rain detection computation start")
rain_working = dict_of_input.get(
"AppHandler").get_directory_manager().get_temporary_directory(
"RainFlagProc_", do_always_remove=True)
image_list = [
dict_of_output.get(constants.CLOUD_MASK_ALL_CLOUDS),
dict_of_output.get("WaterMask")
]
image_list.append(
dict_of_input.get("L1Reader").get_value("IPEDGSubOutput"))
image_list.append(dict_of_input.get("L2Reader").get_value("WASImage"))
image_list.append(dict_of_input.get("L2Reader").get_value("NDTImage"))
exp = "im1b1 || im2b1 || im3b1 || im4b1 || im5b1"
or_all = os.path.join(rain_working, "OrAll.tif")
if dict_of_input.get("Params").get("SnowBandAvailable"):
image_list.append(dict_of_output.get("cld_snow"))
exp = exp + " || im6b1"
param_orall = {"il": image_list, "exp": exp, "out": or_all}
orall_app = OtbAppHandler("BandMath", param_orall, write_output=False)
tocr_extract = os.path.join(rain_working, "Tocr_Extract.tif")
tocrextract_image_app = extract_roi(
dict_of_output.get("RayleighIPTOCR"),
[dict_of_input.get("Params").get("WaterBandIndex_DateD")],
tocr_extract,
write_output=False)
rcr_extract = os.path.join(rain_working, "Rcr_Extract.tif")
rcrextract_image_app = extract_roi(
dict_of_input.get("L2Reader").get_value("RCRImage"),
[dict_of_input.get("Params").get("WaterBandIndex_DateDm1")],
rcr_extract,
write_output=False)
param_rcrstat = {
"im": rcrextract_image_app.getoutput()["out"],
"mask": orall_app.getoutput()["out"],
}
rcrstat_app = OtbAppHandler("Stats", param_rcrstat, write_output=False)
rcr_mean = rcrstat_app.getoutput()["mean"]
param_tocrstat = {
"im": tocrextract_image_app.getoutput()["out"],
"mask": orall_app.getoutput()["out"],
}
tocrstat_app = OtbAppHandler("Stats",
param_tocrstat,
write_output=False)
tocr_mean = tocrstat_app.getoutput()["mean"]
diffMean = rcr_mean - tocr_mean
if diffMean > dict_of_input.get("L2COMM").get_value_f(
"ReflectanceDecreaseThreshold"):
dict_of_output["RainFlag"] = True
else:
dict_of_output["RainFlag"] = False
def run(self, dict_of_input, dict_of_output):
LOGGER.info("Scattering Correction start")
scat_working = dict_of_input.get(
"AppHandler").get_directory_manager().get_temporary_directory(
"ScatteringProc_", do_always_remove=True)
l_caching = dict_of_input.get("Params").get("Caching")
l_writeL2 = dict_of_input.get("Params").get(
"WriteL2ProductToL2Resolution")
tocr_sub_image = os.path.join(scat_working, "tocr_sub.tif")
bands_definition = dict_of_input.get("Plugin").BandsDefinitions
# Coarse scattering correction
param_scattering = {
"lutmap": dict_of_output["hr_lutmap"],
"toac": dict_of_output["AtmoAbsIPTOAC"],
"aot": dict_of_output["AOT_Sub"],
"edg": dict_of_input.get("L1Reader").get_value("IPEDGSubOutput"),
"dtm": dict_of_input.get("DEM").ALC,
"l2nodata": dict_of_input.get("Params").get("RealL2NoData"),
"l2bandincoarse":
bands_definition.get_list_of_band_id_in_l2_coarse(),
"tocr": tocr_sub_image
}
self._scattering_sub_app = OtbAppHandler("ScatteringCorrection",
param_scattering,
write_output=False)
dict_of_output["TOC_sub"] = self._scattering_sub_app.getoutput(
)["tocr"]
# l2 scattering correction
tocr_list = []
if l_writeL2:
l_nbRes = len(bands_definition.ListOfL2Resolution)
for r in range(0, l_nbRes):
l_res = bands_definition.ListOfL2Resolution[r]
tocr_image = os.path.join(scat_working,
"tocr_" + l_res + ".tif")
if dict_of_input.get("Plugin").WideFieldSensor:
param_scattering["anglezone"] = dict_of_input.get(
"L1Reader").get_value("AngleZoneMaskList")[r]
param_scattering["dtm"] = dict_of_input.get("DEM").ALTList[r]
param_scattering["edg"] = dict_of_input.get(
"L1Reader").get_value("L2EDGOutputList")[r]
param_scattering["aot"] = dict_of_output["AOT_" + l_res]
param_scattering["toac"] = dict_of_output["L2TOA_" + l_res]
param_scattering["tocr"] = tocr_image
l_l2bandids = bands_definition.get_list_of_l2_coarse_band_id_associated_to_l2_band_code(
bands_definition.get_list_of_l2_band_code(l_res))
param_scattering["l2bandincoarse"] = [
str(b) for b in l_l2bandids
]
scat_app = OtbAppHandler(
"ScatteringCorrection",
param_scattering,
write_output=is_croco_on("scatteringcorrection"))
self._l2_pipeline.add_otb_app(scat_app)
dict_of_output["TOC_" +
l_res] = scat_app.getoutput().get("tocr")
tocr_list.append(dict_of_output["TOC_" + l_res])
dict_of_output["L2TOCList"] = tocr_list
def write_qlt_product(self, p_res, p_qlt_image_filename, working_dir):
LOGGER.info("EarthExplorerL2ImageFileWriter:WriteQLTproduct()")
l_BandsDefinitions = self._plugin.BandsDefinitions
l_StrRes = l_BandsDefinitions.ListOfL2Resolution[p_res]
QOTHImageList = []
QOTHImageList.append(self._l2edgimagelist[p_res])
QOTHImageList.append(self._l2taomasklist[p_res])
if self._plugin.WaterVapourDetermination:
QOTHImageList.append(self._l2iwcmasklist[p_res])
# Concat to get atb
qoth_tmp_concat = os.path.join(working_dir,
"tmp_qoth_" + l_StrRes + ".tif")
param_qoth_concat = {
"il": QOTHImageList,
"out": qoth_tmp_concat + ":uint8"
}
qoth_concat_app = OtbAppHandler("ConcatenateDoubleImages",
param_qoth_concat,
write_output=False)
qoth_tmp_binconcat = os.path.join(working_dir,
"tmp_binqoth_" + l_StrRes + ".tif")
param_qoth_binconcat = {
"im": qoth_concat_app.getoutput().get("out"),
"out": qoth_tmp_binconcat + ":uint8"
}
qoth_binconcat_app = OtbAppHandler("BinaryConcatenate",
param_qoth_binconcat,
write_output=False)
# -------------------------------------------------------
# Concatenation of the QLT mask with the SAT, PIX and OTH masks
# --------------------------------------------------------
# As for the PIX mask, the SAT mask in concatenate in one band where each bit matches one band
sat_tmp_concat = os.path.join(working_dir,
"tmp_sat_" + l_StrRes + ".tif")
param_sat_binconcat = {
"im": self._l2satimagelist[p_res],
"out": sat_tmp_concat + ":uint8"
}
sat_binconcat_app = OtbAppHandler("BinaryConcatenate",
param_sat_binconcat,
write_output=False)
# Create the QLT vector image
QLTImageList = []
QLTImageList.append(sat_binconcat_app.getoutput().get("out"))
QLTImageList.append(self._l2piximagelist[p_res])
QLTImageList.append(qoth_binconcat_app.getoutput().get("out"))
param_qlt_concat = {
"il": QLTImageList,
"out": p_qlt_image_filename + ":uint8"
}
OtbAppHandler("ConcatenateDoubleImages", param_qlt_concat)
def run(self, dict_of_input, dict_of_output):
LOGGER.info("DTMProcessing computation start")
LOGGER.debug("Caching %s", dict_of_input.get("Params").get("Caching"))
dtm_working = dict_of_input.get(
"AppHandler").get_directory_manager().get_temporary_directory(
"DTmProc_", do_always_remove=True)
solar_imge = os.path.join(dtm_working, "solar_angle.tif")
hid_imge = os.path.join(dtm_working, "dtm_hid.tif")
shd_imge = os.path.join(dtm_working, "dtm_shd.tif")
grid_ref_alt = dict_of_input.get(
"Plugin").ConfigUserCamera.get_Algorithms(
).get_GRID_Reference_Altitudes()
param_solar = {
"sol1.in": dict_of_input.get("L1Reader").get_value("SOL1Image"),
"sol1.h": grid_ref_alt.get_SOLH1(),
"solhref": grid_ref_alt.get_SOLHRef(),
"sol": solar_imge
}
if dict_of_input.get("Plugin").GRIDReferenceAltitudesSOL2GridAvailable:
param_solar["sol2.in"] = dict_of_input.get("L1Reader").get_value(
"SOL2Image")
param_solar["sol2.h"] = grid_ref_alt.get_SOLH2()
self._solar_app = OtbAppHandler("SolarAngle",
param_solar,
write_output=True)
param_dtm = {
"viedtm":
dict_of_input.get("L1Reader").get_value("DTMVIEImage"),
"edg":
dict_of_input.get("L1Reader").get_value("IPEDGSubOutput"),
"distthreshold":
float(dict_of_input.get("L2COMM").get_value("DistanceThreshold")),
"solhref":
self._solar_app.getoutput().get("outhref"),
"viehref":
grid_ref_alt.get_VIEHRef(),
"hid":
hid_imge,
"shd":
shd_imge,
"dtm":
dict_of_input.get("DEM").ALC,
"solar":
self._solar_app.getoutput()["sol"]
}
self._dtm_app = OtbAppHandler("DTMProcessing",
param_dtm,
write_output=True)
# Update global dict with new output
dict_of_output["dtm_shd"] = self._dtm_app.getoutput()["shd"]
dict_of_output["dtm_hid"] = self._dtm_app.getoutput()["hid"]
def clean_pipe(input_file_path):
parameters = {"in": input_file_path,
"startx": 0,
"starty": 0,
"sizex": 1,
"sizey": 1,
"out": "tmp.tif"}
otb_app = OtbAppHandler("ExtractROI",parameters,write_output=False)
parameters2 = {"im": otb_app.getoutput().get("out")}
otb_app2 = OtbAppHandler("Stats", parameters2, write_output=True)
LOGGER.debug("Stats on clean: "+str(otb_app2.getoutput().get("mean")))
del otb_app2
del otb_app
def generate_sol1_image(self, sol_h1, working_dir):
LOGGER.debug("MuscateL1ImageFileReader::GenerateSOL1Image()")
const_pi_18 = 0.01745329251994329577
# SOL1 image pipeline connection
# *********************************************************************************************************
sol_filename = os.path.join(working_dir, "sol1.tif")
mean_solar = self._header_handler.get_mean_solar_angles()
l_sol1 = sol_h1 * math.tan(const_pi_18 * mean_solar[0]) * math.sin(
const_pi_18 * mean_solar[1])
l_sol2 = sol_h1 * math.tan(const_pi_18 * mean_solar[0]) * math.cos(
const_pi_18 * mean_solar[1])
LOGGER.debug("SOL1 parameters : ")
LOGGER.debug(mean_solar)
LOGGER.debug(l_sol1)
LOGGER.debug(l_sol2)
cla_app_1 = constant_image(self._dem.ALC,
l_sol1,
sol_filename,
write_output=False)
cla_app_2 = constant_image(self._dem.ALC,
l_sol2,
sol_filename,
write_output=False)
out_concatenate = os.path.join(working_dir, "sol1_concat.tif")
param_concatenate = {
"il": [
cla_app_1.getoutput().get("out"),
cla_app_2.getoutput().get("out")
],
"out":
out_concatenate
}
OtbAppHandler("ConcatenateDoubleImages", param_concatenate)
self._sol1image = out_concatenate
def write_images(img_list, img_filenames):
# TODO : Remove fixed streaming lines
if len(img_list) != len(img_filenames):
raise MajaBusinessException(
"Not the same number of image and filename given to write_images")
tmp_img_list_clean = []
tmp_filename_list_clean = []
for f in range(len(img_list)):
if type(img_list[f]).__name__ != "str":
tmp_img_list_clean.append(img_list[f])
tmp_filename_list_clean.append(img_filenames[f])
else:
LOGGER.debug("source : " + img_list[f] + " , dest : " +
img_filenames[f])
try:
if not os.path.exists(
img_filenames[f]) or not os.path.samefile(
img_list[f], img_filenames[f]):
shutil.copyfile(img_list[f], img_filenames[f])
except IOError as err:
raise MajaIOError(err)
if len(tmp_img_list_clean) == 0:
return
parameters = {
"il": tmp_img_list_clean,
"filenames": tmp_filename_list_clean
}
app = OtbAppHandler("ImageListWriter", parameters)
del app
def get_ozone_amount(ozone_filename, corner):
ozoneamount = 0.0
l_gribfilename = os.path.splitext(ozone_filename)[0] + ".DBL.BIN"
if os.path.exists(l_gribfilename):
LOGGER.info("Reading meteo file : " + l_gribfilename)
param_app = {
"im": l_gribfilename + "?&resol=7",
"lat": corner.latitude,
"lon": corner.longitude
}
app = OtbAppHandler("OzoneExtractor", param_app)
ozoneamount = app.getoutput()["ozone"]
# ------------------------------------------------------------------------------------
# Conversion from Kg/m2 to cm.atm (Dobson Unit/1000)
# Note:
# - 1 kg[O3]/m2 = 1/2.1416 x 10-5 = 46694.06 dobson
# - 1 cm.atm = 1 jacobson = 1000 dobson
# In the ozone file, the value is in 1 kg[O3]/m2.
# The ozone value computed is in Jacobson (cm.atm/m2)
l_dobsonconversionfactor = 46.694
ozoneamount = ozoneamount * l_dobsonconversionfactor
LOGGER.debug(
"OzoneAmountValue patched with the following Dobson conversion factor "
+ str(l_dobsonconversionfactor) + ".")
return ozoneamount
def band_math(input_file_path_list, exp, output_image, write_output=True):
parameters = {"exp": exp, "il": input_file_path_list, "out": output_image}
app = OtbAppHandler("BandMathDouble", parameters, write_output)
return app
def generate_l2_sat_images(self, l_ListOfL2Resolution, working_dir):
for l1res in range(len(l_ListOfL2Resolution)):
curL1Res = l_ListOfL2Resolution[l1res]
l_ListOfL2BandCode = self._plugin.BandsDefinitions.get_list_of_l2_band_code(
curL1Res)
dtm = self._dem.ALTList[0]
tmp_constant_sat_filename = os.path.join(
working_dir, "SAT_constant_image_{}.tif".format(l1res))
app_constant_sat_app = constant_image(dtm,
0,
tmp_constant_sat_filename,
write_output=False)
self._sat_pipeline.add_otb_app(app_constant_sat_app)
# ******************************************************************************************************
# L2 SAT image pipeline connection
# ******************************************************************************************************
for band in l_ListOfL2BandCode:
self._satmasklist.append(
app_constant_sat_app.getoutput().get("out"))
out_sat_concatenate = os.path.join(
working_dir, "SATVectorImageList{}.tif".format(l1res))
param_concatenate_sat = {
"il": self._satmasklist,
"out": out_sat_concatenate + ":uint8"
}
concatenate_sat_app = OtbAppHandler("ConcatenateDoubleImages",
param_concatenate_sat,
write_output=False)
self._sat_pipeline.add_otb_app(concatenate_sat_app)
# L2SAT
self._l2satmasklist.append(
concatenate_sat_app.getoutput().get("out"))
def get_solar_grids(self, dtm, solarAnglesFile, solH1, working):
solar_grid_filename = os.path.join(working, "solar_grid.tif")
# angle_list_to_image()
solarangle_grid_app = angle_list_to_image(dtm,
solarAnglesFile,
solar_grid_filename,
write_output=False)
# Multiply by the solar reference altitude
solar_grid_mult_filename = os.path.join(working, "solar_grid_mult.tif")
param_scaled_solar = {
"im": solarangle_grid_app.getoutput().get("out"),
"coef": float(solH1),
"out": solar_grid_mult_filename
}
rta_scal_app = OtbAppHandler("MultiplyByScalar",
param_scaled_solar,
write_output=False)
# Expand at L2Coarse.
solar_grid_resamp_filename = os.path.join(working,
"solar_grid_resamp.tif")
resample(rta_scal_app.getoutput().get("out"), dtm,
solar_grid_resamp_filename, OtbResampleType.LINEAR)
self._sol1image = solar_grid_resamp_filename
def generate_toa_sub_images(self, working):
dtm_coarse = self._dem.ALC
# For each band of the input product
tmp_sub_toa_pipe = OtbPipelineManager()
for i, toa in enumerate(self._toa_scalar_list):
# undersampling at L2CoarseResolution
toa_sub_image = os.path.join(working, "aot_sub_{}.tif".format(i))
app = resample(toa,
dtm_coarse,
toa_sub_image,
OtbResampleType.LINEAR_WITH_RADIUS,
write_output=False)
self._toa_sub_list.append(app.getoutput()["out"])
tmp_sub_toa_pipe.add_otb_app(app)
# end band loop
# *******************************************************************************************************
# TOA Sub image pipeline connection
# *******************************************************************************************************
toa_sub_image = os.path.join(working, "aot_sub.tif")
param_concatenate = {"il": self._toa_sub_list, "out": toa_sub_image}
OtbAppHandler("ConcatenateDoubleImages", param_concatenate)
self._sub_toa = toa_sub_image
tmp_sub_toa_pipe.free_otb_app()
def run(self, dict_of_input, dict_of_output):
LOGGER.info("Cirrus flag computation start")
param_cirrus = {
"cla":
dict_of_output["CLA_Sub"],
"edg":
dict_of_input.get("L1Reader").get_value("IPEDGSubOutput"),
"altthreshold":
int(dict_of_input.get("L2COMM").get_value("AltitudeThreshold")),
"minpercentcirrus":
float(dict_of_input.get("L2COMM").get_value("MinPercentCirrus")),
"minpercentcloud":
float(dict_of_input.get("L2COMM").get_value("MinPercentCloud")),
"minstdcirrus":
float(dict_of_input.get("L2COMM").get_value("MinRstdCirrus")),
"minpercentstdcirrus":
float(
dict_of_input.get("L2COMM").get_value("MinPercentStdCirrus")),
"nodata":
dict_of_input.get("L1Info").RealL1NoData
}
cirrus_mask_app = OtbAppHandler("CirrusFlag",
param_cirrus,
write_output=True)
dict_of_output["CirrusFlag"] = cirrus_mask_app.getoutput(
)["cirrusflag"]
cirrus_mask_app = None
def generate_l2_toa_images(self, working_dir):
"""
:param working_dir:
:return:
"""
l_BandsDefinitions = self._plugin.BandsDefinitions
l_ListOfL2Resolution = l_BandsDefinitions.ListOfL2Resolution # ListOfStrings
l_NbL2Res = len(l_ListOfL2Resolution)
for l2res in range(l_NbL2Res):
# Current resolution: "R1" or "R2"
curRes = l_ListOfL2Resolution[l2res]
# Get the list of band of the current resolution
listOfL2Bands = l_BandsDefinitions.get_list_of_l2_band_code(curRes)
nbBand = len(listOfL2Bands)
list_of_image = []
# For each band of the current resolution
for l_StrBandIdL2 in listOfL2Bands:
# Get the L1 band index associated to the L2 band code
l1BandIdx = l_BandsDefinitions.get_band_id_in_l1(l_StrBandIdL2)
# Generate the list of L2 TOA images per resolution
list_of_image.append(self._toa_scalar_list[l1BandIdx])
out_concatenate = os.path.join(
working_dir, "L2TOAImageListVector_" + curRes + ".tif")
param_concatenate = {"il": list_of_image, "out": out_concatenate}
l2toa_concat_app = OtbAppHandler(
"ConcatenateDoubleImages",
param_concatenate,
write_output=(False
or is_croco_on("sentinel2.l1reader.l2toa")))
self._pipeline.add_otb_app(l2toa_concat_app)
self._l2toaimagelist.append(
l2toa_concat_app.getoutput().get("out"))
def generate_vie_image(self, view_href, working_dir):
const_pi_18 = math.pi / 180
vie_filename = os.path.join(working_dir, "vie.tif")
mean_solar = self._header_handler.get_mean_solar_angles()
l_vie1 = view_href * math.tan(const_pi_18 * mean_solar[0]) * math.sin(
const_pi_18 * mean_solar[1])
l_vie2 = view_href * math.tan(const_pi_18 * mean_solar[0]) * math.cos(
const_pi_18 * mean_solar[1])
app_1 = constant_image(self._dem.ALC,
l_vie1,
vie_filename,
write_output=False)
app_2 = constant_image(self._dem.ALC,
l_vie2,
vie_filename,
write_output=False)
out_concatenate = os.path.join(working_dir, "vie_concat.tif")
param_concatenate = {
"il": [app_1.getoutput().get("out"),
app_2.getoutput().get("out")],
"out": out_concatenate
}
app = OtbAppHandler("ConcatenateDoubleImages", param_concatenate)
self._vieimage.append(app.getoutput().get("out"))
self._vie_pipeline.add_otb_app(app)
def generate_sol1_image(self, sol_h1, working_dir):
const_pi_18 = math.pi / 180
sol_filename = os.path.join(working_dir, "sol1.tif")
mean_solar = self._header_handler.get_mean_solar_angles()
l_sol1 = sol_h1 * math.tan(const_pi_18 * mean_solar[0]) * math.sin(
const_pi_18 * mean_solar[1])
l_sol2 = sol_h1 * math.tan(const_pi_18 * mean_solar[0]) * math.cos(
const_pi_18 * mean_solar[1])
cla_app_1 = constant_image(self._dem.ALC,
l_sol1,
sol_filename,
write_output=False)
cla_app_2 = constant_image(self._dem.ALC,
l_sol2,
sol_filename,
write_output=False)
out_concatenate = os.path.join(working_dir, "sol1_concat.tif")
param_concatenate = {
"il": [
cla_app_1.getoutput().get("out"),
cla_app_2.getoutput().get("out")
],
"out":
out_concatenate
}
app = OtbAppHandler("ConcatenateDoubleImages", param_concatenate)
self._sol1image = app.getoutput().get("out")
self._sol1_pipeline.add_otb_app(app)
def generate_sat_sub_image(self, l2comm, working):
# Sat are not provided on landsat 8 thus no need to resample or threshold anything, just create constant
# images at coarse resolution
dtm_coarse = self._dem.ALC
l_ListOfCoarseBandCode = self._plugin.BandsDefinitions.get_list_of_band_id_in_l2_coarse(
)
tmp_constant_sat_filename = os.path.join(working,
"SATSub_constant_image.tif")
app_constant_sat_app = constant_image(dtm_coarse,
0,
tmp_constant_sat_filename +
":uint8",
write_output=False)
self._sat_sub_pipeline.add_otb_app(app_constant_sat_app)
# ******************************************************************************************************
# Sub SAT image pipeline connection
# ******************************************************************************************************
for band in l_ListOfCoarseBandCode:
self._satsublist.append(
app_constant_sat_app.getoutput().get("out"))
# end band loop
#concatenate const image to have the vector image with coarse nb bands
sat_sub_image = os.path.join(working, "sat_sub.tif")
param_concatenate = {
"il": self._satsublist,
"out": sat_sub_image + ":uint8"
}
app_concatenate = OtbAppHandler("ConcatenateMaskImages",
param_concatenate)
self._subsatimage = app_concatenate.getoutput().get("out")
self._sat_sub_pipeline.add_otb_app(app_concatenate)
self._sat_sub_pipeline.free_otb_app()
def generate_vie_image(self, view_href, working_dir):
# *********************************************************************************************************
# VIE image pipeline connection
# *********************************************************************************************************
sol_filename = os.path.join(working_dir, "cla_constant_tmp.tif")
mean_view = self._header_handler.get_mean_viewing_angles()
l_vie1 = view_href * math.tan(mean_view[0]) * math.sin(mean_view[1])
l_vie2 = view_href * math.tan(mean_view[0]) * math.cos(mean_view[1])
vie_app_1 = constant_image(self._dem.ALC,
l_vie1,
sol_filename,
write_output=False)
vie_app_2 = constant_image(self._dem.ALC,
l_vie2,
sol_filename,
write_output=False)
out_concatenate = os.path.join(working_dir, "cla_constant.tif")
param_concatenate = {
"il": [
vie_app_1.getoutput().get("out"),
vie_app_2.getoutput().get("out")
],
"out":
out_concatenate
}
OtbAppHandler("ConcatenateDoubleImages", param_concatenate)
l_BandsDefinitions = self._plugin.BandsDefinitions
self._vieimagelist.append(out_concatenate)
def run(self, dict_of_input, dict_of_output):
LOGGER.info("Water masking computation start")
caching = dict_of_input.get("Params").get("Caching")
if caching:
water_working = dict_of_input.get("AppHandler").get_directory_manager().get_temporary_directory("WaterMaskingProc_",
do_always_remove=True)
else:
water_working = ""
water_mask = os.path.join(water_working, "water_sub.tif")
possible_water_mask = os.path.join(water_working, "possible_water_sub.tif")
tested_water_mask = os.path.join(water_working, "tested_water_sub.tif")
param_water = {"tocr": dict_of_output.get("RayleighIPTOCR"),
"edg": dict_of_input.get("L1Reader").get_value("IPEDGSubOutput"),
"cldsum": dict_of_output.get(constants.CLOUD_MASK_ALL_CLOUDS),
"dtmshd": dict_of_output["dtm_shd"],
"srtmwat": dict_of_input.get("DEM").MSK,
"demslc": dict_of_input.get("DEM").SLC,
"redbandtocr": dict_of_input.get("Params").get("RedBandIndex_DateD"),
"nirbandtocr": dict_of_input.get("Params").get("NIRBandIndex_DateD"),
"nirbandrcr": dict_of_input.get("Params").get("NIRBandIndex_DateDm1"),
"waterndvithreshold": dict_of_input.get("L2COMM").get_value_f("WaterNDVIThreshold"),
"waterreflectancevariationthreshold": dict_of_input.get("L2COMM").get_value_f(
"WaterReflectanceVariationThreshold"),
"maximumsunglintreflectance": dict_of_input.get("L2COMM").get_value_f(
"MaximumSunglintReflectance"),
"srtmgaussiansigma": dict_of_input.get("L2COMM").get_value_f("SRTMSigmaSmoothing"),
"srtmpercent": dict_of_input.get("L2COMM").get_value_f("SRTMPercent"),
"watermasknumber": dict_of_input.get("L2COMM").get_value_i("WaterMaskNumber"),
"minpercentpossiblewater": dict_of_input.get("L2COMM").get_value_f("MinPercentPossibleWater"),
"waterslopethreshold": dict_of_input.get("L2COMM").get_value_f("WaterSlopeThreshold"),
"waterredreflectancethreshold": dict_of_input.get("L2COMM").get_value_f(
"WaterRedReflectanceThreshold"),
"reall2nodata": dict_of_input.get("Params").get("RealL2NoData"),
"was": water_mask + ":uint8",
"pwa": possible_water_mask + ":uint8",
"twa": tested_water_mask + ":uint8"
}
if not dict_of_input.get("Params").get("InitMode"):
param_water["l2rcr"] = dict_of_input.get("L2Reader").get_value("RCRImage")
param_water["l2pwa"] = dict_of_input.get("L2Reader").get_value("PWAImage")
param_water["l2twa"] = dict_of_input.get("L2Reader").get_value("TWAImage")
if dict_of_input.get("Params").get("InitMode"):
param_water["initmode"] = dict_of_input.get("Params").get("InitMode")
if dict_of_output["SunglintFlag"]:
param_water["sunglintflag"] = dict_of_output["SunglintFlag"]
self._water_app = OtbAppHandler("WaterMask", param_water, write_output=True)
# Update output dictionary
dict_of_output["WaterMask"] = self._water_app.getoutput()["was"]
dict_of_output["PossibleWaterMask"] = self._water_app.getoutput()["pwa"]
dict_of_output["TestedWaterMask"] = self._water_app.getoutput()["twa"]
def generate_toa_sub_image(self, working):
dtm_coarse = self._dem.ALC
# For each res of the input L1 product
for i, toa in enumerate(self._l1toaimagelist):
# undersampling at L2CoarseResolution
toa_sub_image = os.path.join(working, "aot_sub_{}.tif".format(i))
app_resample = resample(toa,
dtm_coarse,
toa_sub_image,
OtbResampleType.LINEAR_WITH_RADIUS,
write_output=False)
self._toa_sub_pipeline.add_otb_app(app_resample)
self._toasublist.append(app_resample.getoutput().get("out"))
# end res loop
#concat
toa_sub_image = os.path.join(working, "aot_sub.tif")
param_concatenate = {"il": self._toasublist, "out": toa_sub_image}
app_concatenate = OtbAppHandler("ConcatenateDoubleImages",
param_concatenate,
write_output=False)
self._toa_sub_pipeline.add_otb_app(app_concatenate)
#apply edg
#invert EDG for masking
out_edgsub_threshold = os.path.join(working, "edgsubthreshold.tif")
param_edgsub_threshold = {
"im": self._edgsubmask,
"thresholdvalue": self._toathresholdminvalue,
"equalvalue": 1,
"outsidevalue": 0,
"out": out_edgsub_threshold + ":uint8"
}
app_edgsub_threshold = OtbAppHandler("OneBandEqualThreshold",
param_edgsub_threshold,
write_output=False)
self._toa_sub_pipeline.add_otb_app(app_edgsub_threshold)
#apply mask to sub toa
tmp_l2subtoa = os.path.join(working, "toasub.tif")
app_l2subtoa = apply_mask(app_concatenate.getoutput().get("out"),
app_edgsub_threshold.getoutput().get("out"),
self._reall1nodata,
tmp_l2subtoa,
write_output=True)
self._subtoaimage = app_l2subtoa.getoutput().get("out")
self._toa_sub_pipeline.free_otb_app()
def multiply_by_scalar(input_file_path,
scalar,
output_image,
write_output=True):
parameters = {"coef": scalar, "im": input_file_path, "out": output_image}
app = OtbAppHandler("MultiplyByScalar", parameters, write_output)
return app
def _dilate_and_mask(input, temp, output, mask, radius, caching):
param_dilate = {
"in": input,
"out": temp + ":uint8",
"structype": "ball",
"xradius": radius,
"yradius": radius,
"filter": "dilate"
}
dilate_app = OtbAppHandler("BinaryMorphologicalOperation",
param_dilate,
write_output=caching)
param_mask = {
"il": [dilate_app.getoutput()["out"], mask],
"out": output + ":uint8",
"exp": "(im2b1 !=0)?0:im1b1"
}
mask_app = OtbAppHandler("BandMath", param_mask, write_output=caching)
return mask_app
def extract_roi(input_file_path, channels, output_image, write_output=True):
parameters = {
"in": input_file_path,
"cl": ["Channel" + str(idx + 1) for idx in channels],
"out": output_image
}
if get_test_mode():
parameters.pop("cl")
app = OtbAppHandler("ExtractChannels", parameters, write_output)
return app
def generate_qb_mask(self, qb_filename, working_dir):
img_binaryqb = os.path.join(working_dir, "NoDataFromQBFilter.tif")
param_bintovec_qb = {
"im": qb_filename,
"out": img_binaryqb + ":uint8",
"nbcomp": 16
}
app = OtbAppHandler("BinaryToVector",
param_bintovec_qb,
write_output=False)
self._toa_pipeline.add_otb_app(app)
self._qbmask = app.getoutput().get("out")
self._qb_pipeline.add_otb_app(app)
def assign_zenith_and_azimuth_image_to_grid_to_image(input_image_zen, input_value_azi, output_filename):
"""
:param output_filename:
:param input_image_zen:
:param input_value_azi:
:return:
"""
band_math_1 = OtbAppHandler("BandMath", {"il": [input_image_zen, input_value_azi],
"exp": "tan(im1b1)*sin(im2b1)"}, write_output=False)
pipeline = OtbPipelineManager()
pipeline.add_otb_app(band_math_1)
band_math_2 = OtbAppHandler("BandMath", {"il": [input_image_zen, input_value_azi],
"exp": "tan(im1b1)*cos(im2b1)"}, write_output=False)
pipeline.add_otb_app(band_math_2)
concat = OtbAppHandler("ConcatenateImages", {"il": [band_math_1.getoutput().get(
"out"), band_math_2.getoutput().get("out")], "out": output_filename}, write_output=True)
pipeline.add_otb_app(concat)
return pipeline
def stats(input_file_path, exclude_value=None, input_mask=None, mask_foreground=None, write_output=True):
param_stats = {"im": input_file_path}
if input_mask is not None:
param_stats["mask"] = input_mask
if mask_foreground is not None:
param_stats["maskforeground"] = mask_foreground
if exclude_value is not None:
param_stats["exclude"] = exclude_value
app = OtbAppHandler("Stats", param_stats, write_output)
return app
def constant_image(dtm, value, output_image, write_output=True):
"""
:param output_image:
:param dtm:
:param value:
:param write_output:
:return:
"""
parameters = {"value": value, "dtm": dtm, "out": output_image}
app = OtbAppHandler("ConstantImage", parameters, write_output)
return app
def solar_angle(solar_angle_image, sol1_height, sol_href, output_image, sol2_in=None, sol2_height=None,
write_output=True):
# test about input and raise MajaNotYetImplemented is case of sol2 case
if sol2_in is not None or sol2_height is not None:
raise MajaNotYetImplemented()
parameters = {"sol1.in": solar_angle_image,
"sol1.h": sol1_height,
"solhref": sol_href,
"sol": output_image}
app = OtbAppHandler("SolarAngle", parameters, write_output)
return app