def plot_hor_mag(gplt):
text = gen_codisp_hor_mag_file()
gmt = pGMT.GMT()
gmt.nearneighbor(text.name, G='~ver.grd', I='1k', N='8', R='', S='60k')
gmt = pGMT.GMT()
gmt.makecpt(C='seminf-haxby.cpt', T='-3/.6/0.1', Q='', M='')
gmt.save_stdout('~hor_mag.cpt')
gplt.grdimage('~ver.grd', J='', R='', C='~hor_mag.cpt', O='', K='')
text.close()
# fill water with white color
gplt.pscoast(R='', J='', S='white', O='', K='')
def plot_slip_contour(
self,
contours=[5, 10, 20, 40, 60],
W='thickest',
):
_txt = ''
for ii in contours:
_txt += '%f A\n' % ii
with tempfile.NamedTemporaryFile('w+t') as fid:
fid.write(_txt)
fid.seek(0, 0)
gmt = pGMT.GMT()
self.gplt.grdcontour(
self.slip_file_grd_cutted,
C=fid.name,
A='1+f9+um',
G='n1/.5c',
J='',
R='',
O='',
K='',
W=W,
)
def plot(self):
self._get_info_from_fault_file_and_result_file()
self.gmt = gmt = pGMT.GMT()
self.gplt = gplt = gmt.gplt
gmt.gmtset('ANNOT_FONT_SIZE_PRIMARY','6',
'LABEL_FONT_SIZE','6',
'FONT_ANNOT_PRIMARY','4',
'MAP_FRAME_TYPE','plain',
'MAP_FRAME_PEN','thinner,black',
'PS_MEDIA','letter',
'MAP_TICK_LENGTH_PRIMARY','.05',
'MAP_ANNOT_OFFSET_PRIMARY','.05')
self._plot_coseismic_slip()
# plot afterslip:
self._num_of_subplots_in_a_row = 1
for nth, si in enumerate(self.slip[1:,:,:],1):
offset_X, offset_Y = self._next_offset()
_plt = self._plot_afterslip_at_nth_epoch(
nth = nth,
offset_X = offset_X,
offset_Y = offset_Y
)
if nth ==1:
_plt.add_psscale(
gridline_interval = self.color_label_interval_aslip)
def plot_vertical_coseismic_disp(gplt):
text = gen_coseismic_vertical_file()
gmt = pGMT.GMT()
gmt.nearneighbor(text.name, G='~ver.grd', I='1k', N='8', R='', S='60k')
gplt.grdimage('~ver.grd', J='', R='', C='vertical_disp.cpt', O='', K='')
text.close()
# fill water with white color
gplt.pscoast(R='', J='', S='white', O='', K='')
def _trench_cut_slip_grd(self, grd_in, grd_out):
gmt = pGMT.GMT()
file_mask = join(self._workdir, 'trench_cut_mask.grd')
gmt.grdmask(file_kur_top,
G=file_mask,
A='',
N='1/1/NaN',
I=self.I,
R='')
gmt.grdmath(grd_in, file_mask, 'OR', '= ', grd_out)
def plot_etopo1(gplt, A='-70/20', file_topo_cpt=topo_cpts['afrikakarte']):
gmt = pGMT.GMT()
file_topo_cut = tempfile.NamedTemporaryFile()
gmt.grdcut(file_etopo1, G=file_topo_cut.name, R='')
gmt = pGMT.GMT()
file_topo_grad = tempfile.NamedTemporaryFile()
gmt.grdgradient(file_topo_cut.name, G=file_topo_grad.name, A=A, R='')
gplt.grdimage(file_topo_cut.name,
J='',
C=file_topo_cpt,
I=file_topo_grad.name,
O='',
K='')
# close temporary files:
file_topo_cut.close()
file_topo_grad.close()
def init(self):
self.gmt = pGMT.GMT()
self.gplt = self.gmt.gplt
self.gmt.gmtset('ANNOT_FONT_SIZE_PRIMARY', '10', 'LABEL_FONT_SIZE',
'6', 'FONT_ANNOT_PRIMARY', '10', 'MAP_FRAME_TYPE',
'plain', 'MAP_FRAME_PEN', 'thinner,black', 'PS_MEDIA',
'letter', 'MAP_TICK_LENGTH_PRIMARY', '.05',
'MAP_ANNOT_OFFSET_PRIMARY', '.05')
self._make_cpt_file()
def _interpolate_slip_file(self, out_grd):
make_basename_dir(out_grd)
gmt = pGMT.GMT()
gmt.nearneighbor(self.slip_file_txt,
G='"%s"' % out_grd,
I=self.I,
N='8',
R='',
S='40k')
gmt.grdfilter(out_grd, G=out_grd, D='4', F='c25')
def test(self):
gmt = pGMT.GMT()
gmt.gplt.psbasemap(
R='5/15/52/58', # region
J='B10/55/55/60/10c', # projection
B='4g4',
K='')
gmt.gplt.pscoast(R='', J='', D='f', W='thinnest', O='')
gmt.save(join(self.outs_dir, 'out.pdf'))
gmt.save_shell_script(join(self.outs_dir, 'shell.sh'),
output_file='>out.ps')
def _prepare_intensity_file(self):
self.intensity_file = join(self._workdir, 'intensity.grd')
self._cutted_topo = join(self._workdir, 'cutted_topo.grd')
_intensity_file_before_resample = join(
self._workdir, '~intensity_before_resample.grd')
gmt = pGMT.GMT()
gmt.grdcut(self.topo_file, G=self._cutted_topo, R='')
gmt.grdgradient(self._cutted_topo,
G=_intensity_file_before_resample,
A=self.A,
R='')
gmt.grdsample(_intensity_file_before_resample,
G=self.intensity_file,
I=self.I)
def plot(
infile,
outfile,
if_log_color_scale,
cpt_scale,
contours,
scale_interval,
):
gmt = pGMT.GMT()
gmt.gmtset('ANNOT_FONT_SIZE_PRIMARY', '9', 'LABEL_FONT_SIZE', '9',
'COLOR_NAN', 'white', 'COLOR_BACKGROUND', 'white',
'COLOR_FOREGROUND', 'white')
gmt.gplt.psbasemap(
R='128/148/30/46', # region
J='B138/38/30/46/16c', # projection
B='4',
U='20/0/25/Yang',
P='',
K='')
plt_ver = vj.gmt.GMTXYZ(
gmt,
infile,
cpt_scale=cpt_scale,
if_log_color_scale=if_log_color_scale,
)
plt_ver.plot_xyz()
plt_ver.plot_scale(scale_interval='1')
plt_ver.plot_contour(contours=contours, W='thick')
vj.gmt.plot_plate_boundary(gmt.gplt, color='150')
gmt.gplt.pscoast(R='',
J='',
D='h',
N='a/faint,50,--',
W='faint,100',
L='f145/31/38/200+lkm+jt',
O='',
K='')
vj.gmt.plot_Tohoku_focal_mechanism(gmt.gplt, K=None)
gmt.save(outfile)
gmt.gplt.save_shell_script('shell.sh', output_file=' > out.ps')
def _prepare_cpt_file(self,
original_cpt_file='no_green',
if_cpt_reverse=False):
self.cpt_file = join(self._workdir, 'slip.cpt')
gmt = pGMT.GMT()
if if_cpt_reverse:
I = ''
else:
I = None
gmt.grd2cpt(
self.slip_file_grd,
#C='temperature.cpt',
C=original_cpt_file,
Z='',
I=I,
)
gmt.save_stdout(self.cpt_file)
def plot_stations_map(self):
gmt = pGMT.GMT()
gmt.gmtset('ANNOT_FONT_SIZE_PRIMARY', '9', 'LABEL_FONT_SIZE', '9',
'FONT_ANNOT_PRIMARY', '6', 'MAP_FRAME_TYPE', 'plain')
gplt = gmt.gplt
gplt.psbasemap(
R='125/146/30/46', # region
JB='135.5/38.5/35/41.5/16c', # projection
B='5',
U='18/25/0',
P='',
K='',
)
gplt.pscoast(R='',
J='',
D='h',
N='a/faint,150,-.',
W='faint,dimgray',
A='500',
L='144/32/38/200+lkm+jt',
O='',
K='')
plot_stations(
gplt,
self.sites,
S='s.2',
color='red',
fill_color='red',
fontcolor='blue',
fontsize='8',
text_offset_X=0,
text_offset_Y=0,
)
plot_focal_mechanism_JMA(gplt, scale=.2, fontsize=0)
gplt.finish()
gmt.save(self.file_sites_map)
from os.path import join
import numpy as np
import tempfile
import pGMT
import viscojapan as vj
gmt = pGMT.GMT()
gmt.gmtset(
'ANNOT_FONT_SIZE_PRIMARY',
'9',
'LABEL_FONT_SIZE',
'9',
'BASEMAP_TYPE',
'PLAIN',
)
gplt = gmt.gplt
lon1 = 131.5
lon2 = 135.7
lat1 = 33
lat2 = 35.8
gplt.psbasemap(
R='{lon1}/{lon2}/{lat1}/{lat2}'.format(lon1=lon1,
lon2=lon2,
lat1=lat1,
lat2=lat2), # region
J='B{lon0}/{lat0}/{lat1}/{lat2}/18c'.format(lon0=(lon1 + lon2) / 2.,
def __init__(self):
self.gmt = pGMT.GMT()
self.gplt = self.gmt.gplt
def plot(
disp_file1,
disp_file2,
outf,
leg1='',
leg2='',
color1='black',
color2='red',
):
gmt = pGMT.GMT()
gmt.gmtset(
'ANNOT_FONT_SIZE_PRIMARY',
'9',
'LABEL_FONT_SIZE',
'9',
'BASEMAP_TYPE',
'PLAIN',
)
gplt = gmt.gplt
lon1 = 133.5
lon2 = 135.1
lat1 = 34.5
lat2 = 35.5
gplt.psbasemap(
R='{lon1}/{lon2}/{lat1}/{lat2}'.format(lon1=lon1,
lon2=lon2,
lat1=lat1,
lat2=lat2), # region
J='B{lon0}/{lat0}/{lat1}/{lat2}/18c'.format(lon0=(lon1 + lon2) / 2.,
lat0=(lat1 + lat2) / 2.,
lat1=lat1,
lat2=lat2), # projection
B='.5',
U='20/0/22/Yang',
K='')
gplt.pscoast(R='',
J='',
D='h',
N='a/faint,50,--',
A='500',
G='lightblue2',
O='',
K='')
scale = 27
# plot disp file1
plt_vec = vj.gmt.VecFieldPlotter(gmt, disp_file1, scale, color1)
plt_vec.plot_vectors(arrow_width='.2',
head_length='.1',
head_width='.1',
pen_width='1.2')
plt_vec.plot_vec_legend(
lon=135,
lat=33.4,
leg_len=0.05,
leg_txt=leg1,
text_offset_lon=0,
text_offset_lat=-0.06,
)
# plot disp file2
plt_vec = vj.gmt.VecFieldPlotter(gmt, disp_file2, scale, color2)
plt_vec.plot_vectors(arrow_width='.2',
head_length='.1',
head_width='.1',
pen_width='1.2')
plt_vec.plot_vec_legend(
lon=135,
lat=33.2,
leg_len=0.05,
leg_txt=leg2,
text_offset_lon=0,
text_offset_lat=-0.06,
)
gplt.pscoast(R='',
J='',
D='h',
N='a/faint,50,--',
A='500',
W='faint,100',
L='f144/35.4/38/100+lkm+jt',
O='',
K='')
#plot_horizontal_coseismic_vector(gplt)
vj.gmt.plot_focal_mechanism_JMA(gplt)
gplt.finish()
gmt.save(outf)
def _land_cut_slip_grd(self, grd_in, grd_out):
gmt = pGMT.GMT()
file_mask = join(self._workdir, 'land_mask.grd')
gmt.grdlandmask(R='', Dh='', I=self.I, N='1/NaN', G=file_mask)
gmt.grdmath(grd_in, file_mask, 'OR', '= ', grd_out)
def plot(
self,
lons,
lats,
mags,
output_file,
contours=[0.001, 0.0026, 0.005, 0.01, 0.1, 0.2],
if_topo=True,
unit_label='m',
title='',
):
gmt = pGMT.GMT()
gmt.gmtset('ANNOT_FONT_SIZE_PRIMARY', '9', 'LABEL_FONT_SIZE', '9',
'FONT_ANNOT_PRIMARY', '6', 'MAP_FRAME_TYPE', 'plain')
gplt = gmt.gplt
north = 60
south = 12
east = 190
west = 100
gplt.psbasemap(
R = '{west}/{east}/{south}/{north}'.format(
west = west,
east = east,
south = south,
north = north), # region
JD = '{lon0}/{lat0}/{lat1}/{lat2}/{wid}'\
.format(lon0 = vj.TOHOKU_EPICENTER[0],
lat0 = vj.TOHOKU_EPICENTER[1],
lat1 = south,
lat2 = north,
wid = '9i',
), # projection
B = '20:."%s":'%title, U='18/25/0',
K = '')
# topo
if if_topo:
vj.gmt.plot_etopo1(gplt)
with tempfile.NamedTemporaryFile('w+t') as fid:
self._write_to_temp_file(fid, lons, lats, mags)
pltxyz = vj.gmt.GMTXYZ(
gmt,
file_xyz=fid.name,
if_log_color_scale=True,
cpt_scale='-3.1/0.6/0.001',
interp_inc='40k',
interp_searching_radius='10',
)
#pltxyz.maskout_water(A='1000k',D='h')
#pltxyz.plot_xyz()
pltxyz.plot_contour(
contours=contours,
W='thick,red',
label_line=
'L142.37/38.30/80/60,142.37/38.30/90/20,142.37/38.30/-160/40,158/38.30/180/5',
label_font_size=8,
smooth_factor=100,
unit_label=unit_label,
)
#pltxyz.plot_scale(x=15, y=8)
# plot coast
gplt.pscoast(R='',
J='',
D='h',
N='a/faint,100,-.',
W='faint,50',
A='5000',
Lf='180/15/35/500+lkm+jt',
K='',
O='')
# plot plate boundary
vj.gmt.plot_plate_boundary(gplt, color='100')
vj.gmt.plot_focal_mechanism_JMA(gplt, scale=0.2, fontsize=0)
gplt.finish()
gmt.save(output_file)
def _low_cut_slip_grd(self, grd_in, grd_out):
gmt = pGMT.GMT()
gmt.grdclip(grd_in, G=grd_out, Sb='%f/NaN' % self.low_cut_value)
