def main():
in_folder = sys.argv[1]
out_dir = sys.argv[2]
nickname = sys.argv[3]
cutoffs = sys.argv[4]
num_iter = int(sys.argv[5])
cutoffs = [float(x) for x in cutoffs.split(',')]
cutoffs = sorted([1.01 if x == 1 else x for x in cutoffs])
poss_mat, col_headings = pt.get_pres_abs_mat(in_folder)
results = simulate_reordering(poss_mat, col_headings, cutoffs, num_iter)
cutoffs = [min(x, 1.0) for x in cutoffs]
for result, cutoff in zip(results, cutoffs):
file_name = out_dir + '/' + nickname + '_' + str(cutoff) + '.Rtab'
make_rtab(result, file_name)
def main():
folder = sys.argv[1]
poss_mat, cols = pt.get_pres_abs_mat(folder)
gene_counts_dict = get_gene_counts_dict(poss_mat)
print_c_for_fsgm(gene_counts_dict, len(cols))
def main():
folder = sys.argv[1]
poss_mat, cols = pt.get_pres_abs_mat(folder)
gene_counts_dict = get_gene_counts_dict(poss_mat)
print_c_for_fsgm(gene_counts_dict, len(cols))