def project_with_removed_image_without_image_data(removable_svs_small):
with tempfile.TemporaryDirectory(prefix='paquo-') as tmpdir:
qp = QuPathProject(tmpdir, mode='x')
_ = qp.add_image(removable_svs_small)
qp.save()
removable_svs_small.unlink()
yield qp.path
def project_with_removed_image(removable_svs_small):
with tempfile.TemporaryDirectory(prefix='paquo-') as tmpdir:
qp = QuPathProject(tmpdir, mode='x')
_ = qp.add_image(removable_svs_small,
image_type=QuPathImageType.BRIGHTFIELD_H_E)
qp.save()
removable_svs_small.unlink()
yield qp.path
def project_and_changes(svs_small):
with tempfile.TemporaryDirectory(prefix='paquo-') as tmpdir:
qp = QuPathProject(tmpdir, mode='x')
entry = qp.add_image(svs_small)
entry.hierarchy.add_annotation(
roi=shapely.geometry.Point(1, 2)
)
qp.save()
project_path = qp.path.parent
del qp
last_changes = {}
for file in project_path.glob("**/*.*"):
p = str(file.absolute())
last_changes[p] = file.stat().st_mtime
yield project_path, last_changes
def image_entry(svs_small):
with tempfile.TemporaryDirectory(prefix='paquo-') as tmpdir:
qp = QuPathProject(tmpdir, mode='x')
entry = qp.add_image(svs_small)
yield entry
def test_project_add_image_writes_project(tmp_path, svs_small):
qp = QuPathProject(tmp_path, mode='x')
qp.add_image(svs_small)
assert qp.path.is_file()