Exemple #1
0
def project_with_removed_image_without_image_data(removable_svs_small):
    with tempfile.TemporaryDirectory(prefix='paquo-') as tmpdir:
        qp = QuPathProject(tmpdir, mode='x')
        _ = qp.add_image(removable_svs_small)
        qp.save()
        removable_svs_small.unlink()
        yield qp.path
Exemple #2
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def project_with_removed_image(removable_svs_small):
    with tempfile.TemporaryDirectory(prefix='paquo-') as tmpdir:
        qp = QuPathProject(tmpdir, mode='x')
        _ = qp.add_image(removable_svs_small,
                         image_type=QuPathImageType.BRIGHTFIELD_H_E)
        qp.save()
        removable_svs_small.unlink()
        yield qp.path
def project_and_changes(svs_small):
    with tempfile.TemporaryDirectory(prefix='paquo-') as tmpdir:
        qp = QuPathProject(tmpdir, mode='x')
        entry = qp.add_image(svs_small)
        entry.hierarchy.add_annotation(
            roi=shapely.geometry.Point(1, 2)
        )
        qp.save()
        project_path = qp.path.parent
        del qp

        last_changes = {}
        for file in project_path.glob("**/*.*"):
            p = str(file.absolute())
            last_changes[p] = file.stat().st_mtime

        yield project_path, last_changes
def image_entry(svs_small):
    with tempfile.TemporaryDirectory(prefix='paquo-') as tmpdir:
        qp = QuPathProject(tmpdir, mode='x')
        entry = qp.add_image(svs_small)
        yield entry
Exemple #5
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def test_project_add_image_writes_project(tmp_path, svs_small):
    qp = QuPathProject(tmp_path, mode='x')
    qp.add_image(svs_small)

    assert qp.path.is_file()