def contourf_paraview(self, array):
assert array in self.reader.PointArrays
renderView = pvs.GetActiveViewOrCreate("RenderView")
# get color transfer function/color map for 'array'
LUT = pvs.GetOpacityTransferFunction(array)
# get color legend/bar for LUT in view renderView
LUTColorBar = pvs.GetScalarBar(LUT, renderView)
return renderView, LUTColorBar
def render(self):
self.view = paraview.CreateRenderView()
self.source = paraview.DICOMReaderdirectory(
FileName=self.directory_path)
self.display = paraview.Show(self.source, self.view)
paraview.ResetCamera()
camera = paraview.GetActiveCamera()
self.view.CenterOfRotation = camera.GetFocalPoint()
self.view.CameraParallelProjection = 1
self.view.Background = [0, 0, 0]
self.current_slice = self.display.Slice
self.display.Representation = self.representation
self.display.ColorArrayName = self.array_name
paraview.ColorBy(self.display, self.array_name)
color_map = paraview.GetColorTransferFunction(self.array_name,
self.display)
opacity_map = paraview.GetOpacityTransferFunction(
self.array_name, self.display)
scale_min = color_map.RGBPoints[0]
scale_max = color_map.RGBPoints[-4]
scale_middle = (scale_max - scale_min) / 2
self.scale_range = (scale_min, scale_max)
color_map.RGBPoints = [
scale_min,
0.0,
0.0,
0.0,
scale_max,
1.0,
1.0,
1.0,
]
opacity_map.Points = [
scale_min,
0.0,
0.5,
0.0,
scale_middle,
0.5,
0.5,
0.0,
scale_max,
1.0,
0.5,
0.0,
]
paraview.Render(self.view)
def createOpacityTransferFunction(self, var, points=None):
"""Create an opacity transfer function/color map
"""
# get color transfer function/color map
fct = pv.GetOpacityTransferFunction(var)
if points:
fct.Points = points
fct.ScalarRangeInitialized = 1
return fct
def set_opacity_middle_point(self, point, opacity):
opacity_map = paraview.GetOpacityTransferFunction(
self.array_name, self.display)
opacity_points = []
opacity_points.extend(opacity_map.Points[:4])
opacity_points.extend([point, opacity, 0.5, 0.0])
opacity_points.extend(opacity_map.Points[-4:])
opacity_map.Points = opacity_points
paraview.Render(self.view)
def show(self, key_array="x_velocity", source=None, rescale=False):
"""Show the rendered output on the screen."""
Input = source if source else self.nek5000
display = pv.Show(Input, self.renderView1)
pv.ColorBy(display, ("POINTS", key_array))
if rescale:
display.RescaleTransferFunctionToDataRange(True, False)
display.SetScalarBarVisibility(source, True)
# ... lot of parameters are possible here
pv.SetActiveSource(source)
try:
LUT = pv.GetColorTransferFunction(key_array)
PWF = pv.GetOpacityTransferFunction(key_array)
except AttributeError:
pass
return display
def get_opacity_middle_point(self):
opacity_map = paraview.GetOpacityTransferFunction(
self.array_name, self.display)
return opacity_map.Points[4], opacity_map.Points[5]
kerner_all = simple.servermanager.Fetch(kerner_kernelxdmf)
# Apparently, it is possible to use any name here. We just need a
# transfer function which we can modify later
LUT = simple.GetColorTransferFunction('HalliGalli')
LUT.RGBPoints = [
-1e-10, 0.231373, 0.298039, 0.752941, 0, 1.0, 1.0, 1.0, 1e-10, 0.705882,
0.0156863, 0.14902
]
LUT.NanColor = [0.500008, 0.0, 0.0]
LUT.ScalarRangeInitialized = 1.0
# get any opacity transfer function/opacity map
# Not used so far
PWF = simple.GetOpacityTransferFunction('HalliGalli')
PWF.Points = [-1e-10, 0.0, 0.5, 0.0, 1e-10, 1.0, 0.5, 0.0]
PWF.ScalarRangeInitialized = 1
# setup the color legend parameters for each legend in this view
# get color legend/bar for LUT in view renderView1
LUTColorBar = simple.GetScalarBar(LUT, renderView1)
LUTColorBar.Position = [0.8322310304209063, 0.50956937799043066]
LUTColorBar.Position2 = [0.12, 0.43000000000000077]
LUTColorBar.Title = 'K_x [s/m^3]'
LUTColorBar.ComponentTitle = ''
LUTColorBar.TitleColor = [0.3137, 0.3137, 0.3137]
LUTColorBar.LabelColor = [0.3137, 0.3137, 0.3137]
# Loop over all Point variables in file and print them
def batchVis(c1File,particleFile,step,saveAs):
"""Renders a bijel top down view in paraview and saves a screenshot."""
import paraview.simple as pv
# visualize a vtk file
c1 = pv.LegacyVTKReader(FileNames=c1File)
p = pv.LegacyVTKReader(FileNames=particleFile)
renderView1 = pv.GetActiveViewOrCreate('RenderView')
renderView1.ViewSize = [1298, 860]
renderView1.Background = [1.0, 1.0, 1.0]
renderView1.InteractionMode = '2D'
pDisplay = pv.Show(p, renderView1)
c1Display = pv.Show(c1, renderView1)
# create particle glyphs
glyph = pv.Glyph(Input=p,GlyphType="Sphere")
glyph.ScaleFactor = 1.0
glyph.GlyphMode = 'All Points'
glyph.GlyphType.Radius = 1.0
glyph.GlyphType.ThetaResolution = 20
glyph.GlyphType.PhiResolution = 20
glyph.Scalars = ['POINTS','radius']
glyph.Vectors = ['POINTS','None']
glyph.ScaleMode = 'scalar'
# show data in view
glyphDisplay = pv.Show(glyph, renderView1)
pv.ColorBy(glyphDisplay, None)
pv.SetActiveSource(c1)
pv.ColorBy(c1Display, ('POINTS', 'c1'))
c1Display.RescaleTransferFunctionToDataRange(True)
c1Display.SetRepresentationType('Volume')
# make box outline
# box = pv.Box()
# box.XLength = 128.0
# box.YLength = 128.0
# box.ZLength = 64.0
# box.Center = [64.0, 64.0, 32.0]
# boxDisplay = pv.Show(box, renderView1)
# boxDisplay.SetRepresentationType('Outline')
# boxDisplay.AmbientColor = [0.0, 0.0, 0.0]
# set coloring of c1
c1LUT = pv.GetColorTransferFunction('c1')
c1LUT.RGBPoints = [0.006000000052154064, 0.231373, 0.298039, 0.752941, 0.5120000033639371, 0.865003, 0.865003, 0.865003, 1.0180000066757202, 0.705882, 0.0156863, 0.14902]
c1LUT.ColorSpace = 'Diverging'
c1LUT.BelowRangeColor = [0.0, 0.0, 0.0]
c1LUT.AboveRangeColor = [1.0, 1.0, 1.0]
c1LUT.NanColor = [1.0, 1.0, 0.0]
c1LUT.Discretize = 1
c1LUT.NumberOfTableValues = 256
c1LUT.ScalarRangeInitialized = 1.0
c1LUT.AllowDuplicateScalars = 1
c1PWF = pv.GetOpacityTransferFunction('c1')
c1PWF.Points = [0.0, 0.05, 0.5, 0.0, 0.3, 0.05, 0.5, 0.0, 0.4, 0.5, 0.5, 0.0, 0.6, 0.5, 0.5, 0.0, 0.7, 0.05, 0.5, 0.0, 1., 0.05, 0.5, 0.0]
# annotate time step in rendering
# text = pv.Text
# text.Text = 'Step '+str(step)
# textDisplay = pv.Show(text,renderView1)
# textDisplay.Color = [0.0, 0.0, 0.0]
# textDisplay.WindowLocation = 'UpperCenter'
# reset view to fit data
renderView1.ResetCamera()
# pv.Render()
# save screen shot
viewLayout1 = pv.GetLayout()
print(saveAs)
pv.SaveScreenshot(saveAs, layout=viewLayout1, magnification=1, quality=100)
# clean up
# pv.Delete(box)
pv.Delete(glyph)
pv.Delete(p)
pv.Delete(c1)
del c1
del p
del glyph
def render_frames(
scene,
frames_dir=None,
frame_window=None,
render_missing_frames=False,
save_state_to_file=None,
no_render=False,
show_preview=False,
show_progress=False,
job_id=None,
):
# Validate scene
if scene["View"]["ViewSize"][0] % 16 != 0:
logger.warning(
"The view width should be a multiple of 16 to be compatible with"
" QuickTime.")
if scene["View"]["ViewSize"][1] % 2 != 0:
logger.warning(
"The view height should be even to be compatible with QuickTime.")
render_start_time = time.time()
# Setup layout
layout = pv.CreateLayout("Layout")
# Setup view
if "Background" in scene["View"]:
bg_config = scene["View"]["Background"]
del scene["View"]["Background"]
if isinstance(bg_config, list):
if isinstance(bg_config[0], list):
assert len(bg_config) == 2, (
"When 'Background' is a list of colors, it must have 2"
" entries.")
bg_config = dict(
BackgroundColorMode="Gradient",
Background=parse_as.color(bg_config[0]),
Background2=parse_as.color(bg_config[1]),
)
else:
bg_config = dict(
BackgroundColorMode="Single Color",
Background=parse_as.color(bg_config),
)
bg_config["UseColorPaletteForBackground"] = 0
scene["View"].update(bg_config)
bg_config = None
else:
bg_config = None
view = pv.CreateRenderView(**scene["View"])
pv.AssignViewToLayout(view=view, layout=layout, hint=0)
# Set spherical background texture
if bg_config is not None:
bg_config["BackgroundColorMode"] = "Texture"
skybox_datasource = bg_config["Datasource"]
del bg_config["Datasource"]
background_texture = pvserver.rendering.ImageTexture(
FileName=parse_as.path(scene["Datasources"][skybox_datasource]))
background_sphere = pv.Sphere(Radius=bg_config["Radius"],
ThetaResolution=100,
PhiResolution=100)
background_texture_map = pv.TextureMaptoSphere(Input=background_sphere)
pv.Show(
background_texture_map,
view,
Texture=background_texture,
BackfaceRepresentation="Cull Frontface",
Ambient=1.0,
)
# Load the waveform data file
waveform_h5file, waveform_subfile = parse_as.file_and_subfile(
scene["Datasources"]["Waveform"])
waveform_data = WaveformDataReader(FileName=waveform_h5file,
Subfile=waveform_subfile)
pv.UpdatePipeline()
# Generate volume data from the waveform. Also sets the available time range.
# TODO: Pull KeepEveryNthTimestep out of datasource
waveform_to_volume_configs = scene["WaveformToVolume"]
if isinstance(waveform_to_volume_configs, dict):
waveform_to_volume_configs = [{
"Object": waveform_to_volume_configs,
}]
if "VolumeRepresentation" in scene:
waveform_to_volume_configs[0]["VolumeRepresentation"] = scene[
"VolumeRepresentation"]
waveform_to_volume_objects = []
for waveform_to_volume_config in waveform_to_volume_configs:
volume_data = WaveformToVolume(
WaveformData=waveform_data,
SwshCacheDirectory=parse_as.path(
scene["Datasources"]["SwshCache"]),
**waveform_to_volume_config["Object"],
)
if "Modes" in waveform_to_volume_config["Object"]:
volume_data.Modes = waveform_to_volume_config["Object"]["Modes"]
if "Polarizations" in waveform_to_volume_config["Object"]:
volume_data.Polarizations = waveform_to_volume_config["Object"][
"Polarizations"]
waveform_to_volume_objects.append(volume_data)
# Compute timing and frames information
time_range_in_M = (
volume_data.TimestepValues[0],
volume_data.TimestepValues[-1],
)
logger.debug(f"Full available data time range: {time_range_in_M} (in M)")
if "FreezeTime" in scene["Animation"]:
frozen_time = scene["Animation"]["FreezeTime"]
logger.info(f"Freezing time at {frozen_time}.")
view.ViewTime = frozen_time
animation = None
else:
if "Crop" in scene["Animation"]:
time_range_in_M = scene["Animation"]["Crop"]
logger.debug(f"Cropping time range to {time_range_in_M} (in M).")
animation_speed = scene["Animation"]["Speed"]
frame_rate = scene["Animation"]["FrameRate"]
num_frames = animate.num_frames(
max_animation_length=time_range_in_M[1] - time_range_in_M[0],
animation_speed=animation_speed,
frame_rate=frame_rate,
)
animation_length_in_seconds = num_frames / frame_rate
animation_length_in_M = animation_length_in_seconds * animation_speed
time_per_frame_in_M = animation_length_in_M / num_frames
logger.info(f"Rendering {animation_length_in_seconds:.2f}s movie with"
f" {num_frames} frames ({frame_rate} FPS or"
f" {animation_speed:.2e} M/s or"
f" {time_per_frame_in_M:.2e} M/frame)...")
if frame_window is not None:
animation_window_num_frames = frame_window[1] - frame_window[0]
animation_window_time_range = (
time_range_in_M[0] + frame_window[0] * time_per_frame_in_M,
time_range_in_M[0] +
(frame_window[1] - 1) * time_per_frame_in_M,
)
logger.info(
f"Restricting rendering to {animation_window_num_frames} frames"
f" (numbers {frame_window[0]} to {frame_window[1] - 1}).")
else:
animation_window_num_frames = num_frames
animation_window_time_range = time_range_in_M
frame_window = (0, num_frames)
# Setup animation so that sources can retrieve the `UPDATE_TIME_STEP`
animation = pv.GetAnimationScene()
# animation.UpdateAnimationUsingDataTimeSteps()
# Since the data can be evaluated at arbitrary times we define the time steps
# here by setting the number of frames within the full range
animation.PlayMode = "Sequence"
animation.StartTime = animation_window_time_range[0]
animation.EndTime = animation_window_time_range[1]
animation.NumberOfFrames = animation_window_num_frames
logger.debug(
f"Animating from scene time {animation.StartTime} to"
f" {animation.EndTime} in {animation.NumberOfFrames} frames.")
def scene_time_from_real(real_time):
return (real_time / animation_length_in_seconds *
animation_length_in_M)
# For some reason the keyframe time for animations is expected to be within
# (0, 1) so we need to transform back and forth from this "normalized" time
def scene_time_from_normalized(normalized_time):
return animation.StartTime + normalized_time * (
animation.EndTime - animation.StartTime)
def normalized_time_from_scene(scene_time):
return (scene_time - animation.StartTime) / (animation.EndTime -
animation.StartTime)
# Setup progress measuring already here so volume data computing for
# initial frame is measured
if show_progress and not no_render:
logging.getLogger().handlers = [TqdmLoggingHandler()]
animation_window_frame_range = tqdm.trange(
animation_window_num_frames,
desc="Rendering",
unit="frame",
miniters=1,
position=job_id,
)
else:
animation_window_frame_range = range(animation_window_num_frames)
# Set the initial time step
animation.GoToFirst()
# Display the volume data. This will trigger computing the volume data at the
# current time step.
for volume_data, waveform_to_volume_config in zip(
waveform_to_volume_objects, waveform_to_volume_configs):
vol_repr = (waveform_to_volume_config["VolumeRepresentation"]
if "VolumeRepresentation" in waveform_to_volume_config else
{})
volume_color_by = config_color.extract_color_by(vol_repr)
if (vol_repr["VolumeRenderingMode"] == "GPU Based"
and len(volume_color_by) > 2):
logger.warning(
"The 'GPU Based' volume renderer doesn't support multiple"
" components.")
volume = pv.Show(volume_data, view, **vol_repr)
pv.ColorBy(volume, value=volume_color_by)
if "Slices" in scene:
for slice_config in scene["Slices"]:
slice_obj_config = slice_config.get("Object", {})
slice = pv.Slice(Input=volume_data)
slice.SliceType = "Plane"
slice.SliceOffsetValues = [0.0]
slice.SliceType.Origin = slice_obj_config.get(
"Origin", [0.0, 0.0, -0.3])
slice.SliceType.Normal = slice_obj_config.get(
"Normal", [0.0, 0.0, 1.0])
slice_rep = pv.Show(slice, view,
**slice_config.get("Representation", {}))
pv.ColorBy(slice_rep, value=volume_color_by)
# Display the time
if "TimeAnnotation" in scene:
time_annotation = pv.AnnotateTimeFilter(volume_data,
**scene["TimeAnnotation"])
pv.Show(time_annotation, view, **scene["TimeAnnotationRepresentation"])
# Add spheres
if "Spheres" in scene:
for sphere_config in scene["Spheres"]:
sphere = pv.Sphere(**sphere_config["Object"])
pv.Show(sphere, view, **sphere_config["Representation"])
# Add trajectories and objects that follow them
if "Trajectories" in scene:
for trajectory_config in scene["Trajectories"]:
trajectory_name = trajectory_config["Name"]
radial_scale = (trajectory_config["RadialScale"]
if "RadialScale" in trajectory_config else 1.0)
# Load the trajectory data
traj_data_reader = TrajectoryDataReader(
RadialScale=radial_scale,
**scene["Datasources"]["Trajectories"][trajectory_name],
)
# Make sure the data is loaded so we can retrieve timesteps.
# TODO: This should be fixed in `TrajectoryDataReader` by
# communicating time range info down the pipeline, but we had issues
# with that (see also `WaveformDataReader`).
traj_data_reader.UpdatePipeline()
if "Objects" in trajectory_config:
with animate.restore_animation_state(animation):
follow_traj = FollowTrajectory(
TrajectoryData=traj_data_reader)
for traj_obj_config in trajectory_config["Objects"]:
for traj_obj_key in traj_obj_config:
if traj_obj_key in [
"Representation",
"Visibility",
"TimeShift",
"Glyph",
]:
continue
traj_obj_type = getattr(pv, traj_obj_key)
traj_obj_glyph = traj_obj_type(
**traj_obj_config[traj_obj_key])
follow_traj.UpdatePipeline()
traj_obj = pv.Glyph(Input=follow_traj,
GlyphType=traj_obj_glyph)
# Can't set this in the constructor for some reason
traj_obj.ScaleFactor = 1.0
for glyph_property in (traj_obj_config["Glyph"] if "Glyph"
in traj_obj_config else []):
setattr(
traj_obj,
glyph_property,
traj_obj_config["Glyph"][glyph_property],
)
traj_obj.UpdatePipeline()
if "TimeShift" in traj_obj_config:
traj_obj = animate.apply_time_shift(
traj_obj, traj_obj_config["TimeShift"])
pv.Show(traj_obj, view,
**traj_obj_config["Representation"])
if "Visibility" in traj_obj_config:
animate.apply_visibility(
traj_obj,
traj_obj_config["Visibility"],
normalized_time_from_scene,
scene_time_from_real,
)
if "Tail" in trajectory_config:
with animate.restore_animation_state(animation):
traj_tail = TrajectoryTail(TrajectoryData=traj_data_reader)
if "TimeShift" in trajectory_config:
traj_tail = animate.apply_time_shift(
traj_tail, trajectory_config["TimeShift"])
tail_config = trajectory_config["Tail"]
traj_color_by = config_color.extract_color_by(tail_config)
if "Visibility" in tail_config:
tail_visibility_config = tail_config["Visibility"]
del tail_config["Visibility"]
else:
tail_visibility_config = None
tail_rep = pv.Show(traj_tail, view, **tail_config)
pv.ColorBy(tail_rep, value=traj_color_by)
if tail_visibility_config is not None:
animate.apply_visibility(
traj_tail,
tail_visibility_config,
normalized_time_from_scene=normalized_time_from_scene,
scene_time_from_real=scene_time_from_real,
)
if "Move" in trajectory_config:
move_config = trajectory_config["Move"]
logger.debug(
f"Animating '{move_config['guiName']}' along trajectory.")
with h5py.File(trajectory_file, "r") as traj_data_file:
trajectory_data = np.array(
traj_data_file[trajectory_subfile])
if radial_scale != 1.0:
trajectory_data[:, 1:] *= radial_scale
logger.debug(f"Trajectory data shape: {trajectory_data.shape}")
animate.follow_path(
gui_name=move_config["guiName"],
trajectory_data=trajectory_data,
num_keyframes=move_config["NumKeyframes"],
scene_time_range=time_range_in_M,
normalized_time_from_scene=normalized_time_from_scene,
)
# Add non-spherical horizon shapes (instead of spherical objects following
# trajectories)
if "Horizons" in scene:
for horizon_config in scene["Horizons"]:
with animate.restore_animation_state(animation):
horizon = pv.PVDReader(FileName=scene["Datasources"]
["Horizons"][horizon_config["Name"]])
if horizon_config.get("InterpolateTime", False):
horizon = pv.TemporalInterpolator(
Input=horizon, DiscreteTimeStepInterval=0)
if "TimeShift" in horizon_config:
horizon = animate.apply_time_shift(horizon,
horizon_config["TimeShift"],
animation)
# Try to make horizon surfaces smooth. At low angular resoluton
# they still show artifacts, so perhaps more can be done.
horizon = pv.ExtractSurface(Input=horizon)
horizon = pv.GenerateSurfaceNormals(Input=horizon)
horizon_rep_config = horizon_config.get("Representation", {})
if "Representation" not in horizon_rep_config:
horizon_rep_config["Representation"] = "Surface"
if "AmbientColor" not in horizon_rep_config:
horizon_rep_config["AmbientColor"] = [0.0, 0.0, 0.0]
if "DiffuseColor" not in horizon_rep_config:
horizon_rep_config["DiffuseColor"] = [0.0, 0.0, 0.0]
if "Specular" not in horizon_rep_config:
horizon_rep_config["Specular"] = 0.2
if "SpecularPower" not in horizon_rep_config:
horizon_rep_config["SpecularPower"] = 10
if "SpecularColor" not in horizon_rep_config:
horizon_rep_config["SpecularColor"] = [1.0, 1.0, 1.0]
if "ColorBy" in horizon_rep_config:
horizon_color_by = config_color.extract_color_by(
horizon_rep_config)
else:
horizon_color_by = None
horizon_rep = pv.Show(horizon, view, **horizon_rep_config)
if horizon_color_by is not None:
pv.ColorBy(horizon_rep, value=horizon_color_by)
# Animate visibility
if "Visibility" in horizon_config:
animate.apply_visibility(
horizon,
horizon_config["Visibility"],
normalized_time_from_scene=normalized_time_from_scene,
scene_time_from_real=scene_time_from_real,
)
if "Contours" in horizon_config:
for contour_config in horizon_config["Contours"]:
contour = pv.Contour(Input=horizon,
**contour_config["Object"])
contour_rep = pv.Show(contour, view,
**contour_config["Representation"])
pv.ColorBy(contour_rep, None)
if "Visibility" in horizon_config:
animate.apply_visibility(
contour,
horizon_config["Visibility"],
normalized_time_from_scene=
normalized_time_from_scene,
scene_time_from_real=scene_time_from_real,
)
# Configure transfer functions
if "TransferFunctions" in scene:
for tf_config in scene["TransferFunctions"]:
colored_field = tf_config["Field"]
transfer_fctn = pv.GetColorTransferFunction(colored_field)
opacity_fctn = pv.GetOpacityTransferFunction(colored_field)
tf.configure_transfer_function(transfer_fctn, opacity_fctn,
tf_config["TransferFunction"])
# Save state file before configuring camera keyframes.
# TODO: Make camera keyframes work with statefile
if save_state_to_file is not None:
pv.SaveState(save_state_to_file + ".pvsm")
# Camera shots
# TODO: Make this work with freezing time while the camera is swinging
if animation is None:
for i, shot in enumerate(scene["CameraShots"]):
if (i == len(scene["CameraShots"]) - 1 or
(shot["Time"] if "Time" in shot else 0.0) >= view.ViewTime):
camera_motion.apply(shot)
break
else:
camera_motion.apply_swings(
scene["CameraShots"],
scene_time_range=time_range_in_M,
scene_time_from_real=scene_time_from_real,
normalized_time_from_scene=normalized_time_from_scene,
)
# Report time
if animation is not None:
report_time_cue = pv.PythonAnimationCue()
report_time_cue.Script = """
def start_cue(self): pass
def tick(self):
import paraview.simple as pv
import logging
logger = logging.getLogger('Animation')
scene_time = pv.GetActiveView().ViewTime
logger.info(f"Scene time: {scene_time}")
def end_cue(self): pass
"""
animation.Cues.append(report_time_cue)
if show_preview and animation is not None:
animation.PlayMode = "Real Time"
animation.Duration = 10
animation.Play()
animation.PlayMode = "Sequence"
if no_render:
logger.info("No rendering requested. Total time:"
f" {time.time() - render_start_time:.2f}s")
return
if frames_dir is None:
raise RuntimeError("Trying to render but `frames_dir` is not set.")
if os.path.exists(frames_dir):
logger.warning(
f"Output directory '{frames_dir}' exists, files may be overwritten."
)
else:
os.makedirs(frames_dir)
if animation is None:
pv.Render()
pv.SaveScreenshot(os.path.join(frames_dir, "frame.png"))
else:
# Iterate over frames manually to support filling in missing frames.
# If `pv.SaveAnimation` would support that, here's how it could be
# invoked:
# pv.SaveAnimation(
# os.path.join(frames_dir, 'frame.png'),
# view,
# animation,
# FrameWindow=frame_window,
# SuffixFormat='.%06d')
# Note that `FrameWindow` appears to be buggy, so we set up the
# `animation` according to the `frame_window` above so the frame files
# are numberd correctly.
for animation_window_frame_i in animation_window_frame_range:
frame_i = frame_window[0] + animation_window_frame_i
frame_file = os.path.join(frames_dir, f"frame.{frame_i:06d}.png")
if render_missing_frames and os.path.exists(frame_file):
continue
logger.debug(f"Rendering frame {frame_i}...")
animation.AnimationTime = (
animation.StartTime +
time_per_frame_in_M * animation_window_frame_i)
pv.Render()
pv.SaveScreenshot(frame_file)
logger.info(f"Rendered frame {frame_i}.")
logger.info(
f"Rendering done. Total time: {time.time() - render_start_time:.2f}s")
def updateUserSelectionLutProperties(self):
lutProxy = simple.GetColorTransferFunction(USER_SELECTION)
lutPwf = simple.GetOpacityTransferFunction(USER_SELECTION)
if not lutProxy:
print(
'There is no such color transfer function (%s) at this time' %
USER_SELECTION)
return
if not lutPwf:
print(
'There is no such opacity transfer function (%s) at this time'
% USER_SELECTION)
return
preset = self.lutMap[SELECTION_COLORMAP]['IndexedColors']
if not preset:
print('You are missing the "%s" color map definition' %
SELECTION_COLORMAP)
return
activeAnnotation = self.activeSelectionInformation["activeAnnotation"]
activeScores = self.activeSelectionInformation["activeScores"]
annoType = activeAnnotation['selection']['type']
annoScore = activeAnnotation['score']
# append a 0 so unselected scores don't show by default.
scoreOpacities = [ 1.0 if score['index'] in activeScores else 0.0 for score in self._serverScores ] + \
[1.0 if self._unselectedIndex in activeScores else 0.0]
numScores = len(self._serverScores)
pwfPoints = []
rgbPoints = []
delX = 0.49
# import pdb; pdb.set_trace()
### Inside the cases below I also need to create custom opacity and size pwfs for
### the "user selection" array
### We take into account the "activeScores" pushed here by the client
### so we can show/hide the appropriate subsets of points using a dedicated
### opacity transfer function on the lookup table
usRange = [
self.userSelPointSizeRange[0], self.userSelPointSizeRange[1]
]
usDelta = (usRange[1] - usRange[0]) / numScores
# unselected value is last, should be the minimum value.
sizeStops = [
usRange[0] + (i + 1) * usDelta for i in range(numScores - 1)
] + [usRange[1], usRange[0]]
if annoType == 'range':
scoreIndex = annoScore[0]
rgbPoints = []
pwfPoints = []
self.userSelScalePoints = []
for selVal in [scoreIndex, self._unselectedIndex]:
presetOffset = selVal * 3
# add the selected color
rgbPoints += [selVal - delX
] + preset[presetOffset:presetOffset + 3] + [
selVal + delX
] + preset[presetOffset:presetOffset + 3]
opacity = scoreOpacities[selVal]
pwfPoints += [
selVal - delX, opacity, 0.5, 0.0, selVal + delX, opacity,
0.5, 0.0
]
self.userSelScalePoints += [
selVal - delX, sizeStops[selVal], 0.5, 0.0, selVal + delX,
sizeStops[selVal], 0.5, 0.0
]
elif annoType == 'partition':
self.userSelScalePoints = []
for idx in range(len(annoScore)):
scoreIndex = annoScore[idx]
presetOffset = scoreIndex * 3
x1 = scoreIndex - delX
x2 = scoreIndex + delX
opacity = scoreOpacities[scoreIndex]
rgbPoints += [x1] + preset[presetOffset:presetOffset + 3]
rgbPoints += [x2] + preset[presetOffset:presetOffset + 3]
pwfPoints += [x1, opacity, 0.5, 0.0, x2, opacity, 0.5, 0.0]
self.userSelScalePoints += [
x1, sizeStops[scoreIndex], 0.5, 0.0, x2,
sizeStops[scoreIndex], 0.5, 0.0
]
elif annoType == 'empty':
selVal = self._unselectedIndex
opacity = scoreOpacities[selVal]
rgbPoints = [selVal - delX] + preset[3 * selVal:3 * selVal + 3] + [
selVal + delX
] + preset[3 * selVal:3 * selVal + 3]
pwfPoints = [
selVal - delX, opacity, 0.5, 0.0, selVal + delX, opacity, 0.5,
0.0
]
self.userSelScalePoints = [
selVal - delX, usRange[0], 0.5, 0.0, selVal + delX, usRange[0],
0.5, 0.0
]
else:
print('Unknown annotation selection type: %s' % annoType)
return
# print('rgbPoints', rgbPoints)
# print('pwfPoints', pwfPoints)
lutProxy.RGBPoints = rgbPoints
lutProxy.ScalarRangeInitialized = 1.0
if len(pwfPoints) > 0:
lutPwf.Points = pwfPoints
lutPwf.ScalarRangeInitialized = 1
lutProxy.EnableOpacityMapping = 1
else:
lutProxy.EnableOpacityMapping = 0
self._selectionLutInitialized = True
# Let PV know that the VTK data has been modified
if self.trivProducer:
self.trivProducer.MarkModified(self.trivProducer)
self.getApplication().InvokeEvent('UpdateEvent')
renderView1.Update()
# set scalar coloring
pv.ColorBy(ablnek5000Display, ('POINTS', 'x_velocity'))
# rescale color and/or opacity maps used to include current data range
ablnek5000Display.RescaleTransferFunctionToDataRange(True, False)
# show color bar/color legend
ablnek5000Display.SetScalarBarVisibility(renderView1, True)
# get color transfer function/color map for 'x_velocity'
x_velocityLUT = pv.GetColorTransferFunction('x_velocity')
# get opacity transfer function/opacity map for 'x_velocity'
x_velocityPWF = pv.GetOpacityTransferFunction('x_velocity')
# set scalar coloring
pv.ColorBy(ablnek5000Display, ('POINTS', 'y_velocity'))
# Hide the scalar bar for this color map if no visible data is colored by it.
pv.HideScalarBarIfNotNeeded(x_velocityLUT, renderView1)
# rescale color and/or opacity maps used to include current data range
ablnek5000Display.RescaleTransferFunctionToDataRange(True, False)
# show color bar/color legend
ablnek5000Display.SetScalarBarVisibility(renderView1, True)
# get color transfer function/color map for 'y_velocity'
y_velocityLUT = pv.GetColorTransferFunction('y_velocity')
def initialize(self):
# Bring used components
self.registerVtkWebProtocol(pv_protocols.ParaViewWebMouseHandler())
self.registerVtkWebProtocol(pv_protocols.ParaViewWebViewPort())
self.registerVtkWebProtocol(
pv_protocols.ParaViewWebViewPortImageDelivery())
self.registerVtkWebProtocol(amsProtocol())
self.updateSecret(_DemoServer.authKey)
# Disable interactor-based render calls
simple.GetRenderView().EnableRenderOnInteraction = 0
simple.GetRenderView().Background = [0, 0, 0]
#cone = simple.Cone()
#simple.Show(cone)
# create a new 'EnSight Reader'
#### disable automatic camera reset on 'Show'
#paraview.simple._DisableFirstRenderCameraReset()
# create a new 'EnSight Reader'
matvizmofTFF90L91lpm100rpmcase = simple.EnSightReader(
CaseFileName=
'/Users/tomfool/tech/18/amgen/ams-102-AgileViz/EnSight/mat-viz-mofTFF-90L-9.1lpm-100rpm/mat-viz-mofTFF-90L-9.1lpm-100rpm.case'
)
matvizmofTFF90L91lpm100rpmcase.PointArrays = [
'pressure', 'pressure_coefficient', 'dynamic_pressure',
'absolute_pressure', 'total_pressure', 'rel_total_pressure',
'density', 'density_all', 'velocity_magnitude', 'x_velocity',
'y_velocity', 'z_velocity', 'axial_velocity', 'radial_velocity',
'tangential_velocity', 'rel_velocity_magnitude',
'relative_x_velocity', 'relative_y_velocity',
'relative_z_velocity', 'rel_tangential_velocity',
'mesh_x_velocity', 'mesh_y_velocity', 'mesh_z_velocity',
'velocity_angle', 'relative_velocity_angle', 'vorticity_mag',
'helicity', 'x_vorticity', 'y_vorticity', 'z_vorticity',
'cell_reynolds_number', 'turb_kinetic_energy', 'turb_intensity',
'turb_diss_rate', 'production_of_k', 'viscosity_turb',
'viscosity_eff', 'viscosity_ratio', 'y_star', 'y_plus',
'uds_0_scalar', 'uds_0_diff_scalar', 'viscosity_lam', 'wall_shear',
'x_wall_shear', 'y_wall_shear', 'z_wall_shear',
'skin_friction_coef', 'cell_partition_active',
'cell_partition_stored', 'cell_id', 'cell_element_type',
'cell_type', 'cell_zone', 'partition_neighbors', 'cell_weight',
'x_coordinate', 'y_coordinate', 'z_coordinate', 'axial_coordinate',
'angular_coordinate', 'abs_angular_coordinate',
'radial_coordinate', 'face_area_magnitude', 'x_face_area',
'y_face_area', 'z_face_area', 'cell_volume', 'orthogonal_quality',
'cell_equiangle_skew', 'cell_equivolume_skew', 'face_handedness',
'mark_poor_elememts', 'interface_overlap_fraction',
'cell_wall_distance', 'adaption_function', 'adaption_curvature',
'adaption_space_gradient', 'adaption_iso_value',
'boundary_cell_dist', 'boundary_normal_dist', 'cell_volume_change',
'cell_surface_area', 'cell_warp', 'cell_children',
'cell_refine_level', 'mass_imbalance', 'strain_rate_mag',
'dx_velocity_dx', 'dy_velocity_dx', 'dz_velocity_dx',
'dx_velocity_dy', 'dy_velocity_dy', 'dz_velocity_dy',
'dx_velocity_dz', 'dy_velocity_dz', 'dz_velocity_dz', 'dp_dx',
'dp_dy', 'dp_dz', 'velocity'
]
# get active view
renderView1 = simple.GetActiveViewOrCreate('RenderView')
# uncomment following to set a specific view size
# renderView1.ViewSize = [1638, 1076]
# show data in view
matvizmofTFF90L91lpm100rpmcaseDisplay = simple.Show(
matvizmofTFF90L91lpm100rpmcase, renderView1)
# get color transfer function/color map for 'pressure'
pressureLUT = simple.GetColorTransferFunction('pressure')
# get opacity transfer function/opacity map for 'pressure'
pressurePWF = simple.GetOpacityTransferFunction('pressure')
# trace defaults for the display properties.
matvizmofTFF90L91lpm100rpmcaseDisplay.Representation = 'Surface'
matvizmofTFF90L91lpm100rpmcaseDisplay.ColorArrayName = [
'POINTS', 'pressure'
]
matvizmofTFF90L91lpm100rpmcaseDisplay.LookupTable = pressureLUT
matvizmofTFF90L91lpm100rpmcaseDisplay.OSPRayScaleArray = 'pressure'
matvizmofTFF90L91lpm100rpmcaseDisplay.OSPRayScaleFunction = 'PiecewiseFunction'
matvizmofTFF90L91lpm100rpmcaseDisplay.SelectOrientationVectors = 'velocity'
matvizmofTFF90L91lpm100rpmcaseDisplay.ScaleFactor = 0.07445502169430256
matvizmofTFF90L91lpm100rpmcaseDisplay.SelectScaleArray = 'pressure'
matvizmofTFF90L91lpm100rpmcaseDisplay.GlyphType = 'Arrow'
matvizmofTFF90L91lpm100rpmcaseDisplay.GlyphTableIndexArray = 'pressure'
matvizmofTFF90L91lpm100rpmcaseDisplay.GaussianRadius = 0.03722751084715128
matvizmofTFF90L91lpm100rpmcaseDisplay.SetScaleArray = [
'POINTS', 'pressure'
]
matvizmofTFF90L91lpm100rpmcaseDisplay.ScaleTransferFunction = 'PiecewiseFunction'
matvizmofTFF90L91lpm100rpmcaseDisplay.OpacityArray = [
'POINTS', 'pressure'
]
matvizmofTFF90L91lpm100rpmcaseDisplay.OpacityTransferFunction = 'PiecewiseFunction'
matvizmofTFF90L91lpm100rpmcaseDisplay.DataAxesGrid = 'GridAxesRepresentation'
matvizmofTFF90L91lpm100rpmcaseDisplay.SelectionCellLabelFontFile = ''
matvizmofTFF90L91lpm100rpmcaseDisplay.SelectionPointLabelFontFile = ''
matvizmofTFF90L91lpm100rpmcaseDisplay.PolarAxes = 'PolarAxesRepresentation'
matvizmofTFF90L91lpm100rpmcaseDisplay.ScalarOpacityFunction = pressurePWF
matvizmofTFF90L91lpm100rpmcaseDisplay.ScalarOpacityUnitDistance = 0.007476863260594431
# init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
matvizmofTFF90L91lpm100rpmcaseDisplay.ScaleTransferFunction.Points = [
-152.6022491455078, 0.0, 0.5, 0.0, 144.73870849609375, 1.0, 0.5,
0.0
]
# init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
matvizmofTFF90L91lpm100rpmcaseDisplay.OpacityTransferFunction.Points = [
-152.6022491455078, 0.0, 0.5, 0.0, 144.73870849609375, 1.0, 0.5,
0.0
]
# init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
matvizmofTFF90L91lpm100rpmcaseDisplay.DataAxesGrid.XTitleFontFile = ''
matvizmofTFF90L91lpm100rpmcaseDisplay.DataAxesGrid.YTitleFontFile = ''
matvizmofTFF90L91lpm100rpmcaseDisplay.DataAxesGrid.ZTitleFontFile = ''
matvizmofTFF90L91lpm100rpmcaseDisplay.DataAxesGrid.XLabelFontFile = ''
matvizmofTFF90L91lpm100rpmcaseDisplay.DataAxesGrid.YLabelFontFile = ''
matvizmofTFF90L91lpm100rpmcaseDisplay.DataAxesGrid.ZLabelFontFile = ''
# init the 'PolarAxesRepresentation' selected for 'PolarAxes'
matvizmofTFF90L91lpm100rpmcaseDisplay.PolarAxes.PolarAxisTitleFontFile = ''
matvizmofTFF90L91lpm100rpmcaseDisplay.PolarAxes.PolarAxisLabelFontFile = ''
matvizmofTFF90L91lpm100rpmcaseDisplay.PolarAxes.LastRadialAxisTextFontFile = ''
matvizmofTFF90L91lpm100rpmcaseDisplay.PolarAxes.SecondaryRadialAxesTextFontFile = ''
# reset view to fit data
renderView1.ResetCamera()
# show color bar/color legend
matvizmofTFF90L91lpm100rpmcaseDisplay.SetScalarBarVisibility(
renderView1, True)
# update the view to ensure updated data information
renderView1.Update()
# hide data in view
simple.Hide(matvizmofTFF90L91lpm100rpmcase, renderView1)
# create a new 'Contour'
contour1 = simple.Contour(Input=matvizmofTFF90L91lpm100rpmcase)
contour1.ContourBy = ['POINTS', 'pressure']
contour1.Isosurfaces = [-3.9317703247070312]
contour1.PointMergeMethod = 'Uniform Binning'
# Properties modified on contour1
contour1.ContourBy = ['POINTS', 'uds_0_scalar']
contour1.Isosurfaces = [480.0, 570.0]
# show data in view
contour1Display = simple.Show(contour1, renderView1)
# trace defaults for the display properties.
contour1Display.Representation = 'Surface'
contour1Display.ColorArrayName = ['POINTS', 'pressure']
contour1Display.LookupTable = pressureLUT
contour1Display.OSPRayScaleArray = 'Normals'
contour1Display.OSPRayScaleFunction = 'PiecewiseFunction'
contour1Display.SelectOrientationVectors = 'velocity'
contour1Display.ScaleFactor = 0.07228952534496784
contour1Display.SelectScaleArray = 'None'
contour1Display.GlyphType = 'Arrow'
contour1Display.GlyphTableIndexArray = 'None'
contour1Display.GaussianRadius = 0.03614476267248392
contour1Display.SetScaleArray = ['POINTS', 'Normals']
contour1Display.ScaleTransferFunction = 'PiecewiseFunction'
contour1Display.OpacityArray = ['POINTS', 'Normals']
contour1Display.OpacityTransferFunction = 'PiecewiseFunction'
contour1Display.DataAxesGrid = 'GridAxesRepresentation'
contour1Display.SelectionCellLabelFontFile = ''
contour1Display.SelectionPointLabelFontFile = ''
contour1Display.PolarAxes = 'PolarAxesRepresentation'
# init the 'PiecewiseFunction' selected for 'ScaleTransferFunction'
contour1Display.ScaleTransferFunction.Points = [
-0.9995924830436707, 0.0, 0.5, 0.0, 0.9998393058776855, 1.0, 0.5,
0.0
]
# init the 'PiecewiseFunction' selected for 'OpacityTransferFunction'
contour1Display.OpacityTransferFunction.Points = [
-0.9995924830436707, 0.0, 0.5, 0.0, 0.9998393058776855, 1.0, 0.5,
0.0
]
# init the 'GridAxesRepresentation' selected for 'DataAxesGrid'
contour1Display.DataAxesGrid.XTitleFontFile = ''
contour1Display.DataAxesGrid.YTitleFontFile = ''
contour1Display.DataAxesGrid.ZTitleFontFile = ''
contour1Display.DataAxesGrid.XLabelFontFile = ''
contour1Display.DataAxesGrid.YLabelFontFile = ''
contour1Display.DataAxesGrid.ZLabelFontFile = ''
# init the 'PolarAxesRepresentation' selected for 'PolarAxes'
contour1Display.PolarAxes.PolarAxisTitleFontFile = ''
contour1Display.PolarAxes.PolarAxisLabelFontFile = ''
contour1Display.PolarAxes.LastRadialAxisTextFontFile = ''
contour1Display.PolarAxes.SecondaryRadialAxesTextFontFile = ''
# reset view to fit data
renderView1.ResetCamera()
# hide data in view
simple.Hide(matvizmofTFF90L91lpm100rpmcase, renderView1)
# show color bar/color legend
contour1Display.SetScalarBarVisibility(renderView1, True)
# update the view to ensure updated data information
renderView1.Update()
# set scalar coloring
simple.ColorBy(contour1Display, ('POINTS', 'velocity_magnitude'))
# rescale color and/or opacity maps used to include current data range
contour1Display.RescaleTransferFunctionToDataRange(True, False)
# show color bar/color legend
contour1Display.SetScalarBarVisibility(renderView1, True)
# get color transfer function/color map for 'velocity_magnitude'
velocity_magnitudeLUT = simple.GetColorTransferFunction(
'velocity_magnitude')
#### saving camera placements for all active views
# current camera placement for renderView1
renderView1.CameraPosition = [
1.3051878628081257, -1.32358496378265, -0.017141331493847792
]
renderView1.CameraFocalPoint = [
-0.052487090229988105, 0.03264869749546056, -0.3026974257081747
]
renderView1.CameraViewUp = [
-0.5051031518286454, -0.33848038039346323, 0.7939155106820026
]
renderView1.CameraParallelScale = 0.5021485229089222
#### uncomment the following to render all views
# RenderAllViews()
# alternatively, if you want to write images, you can use SaveScreenshot(...).
### OLD FOLLOWS
simple.Render()
# Update interaction mode
pxm = simple.servermanager.ProxyManager()
interactionProxy = pxm.GetProxy('settings',
'RenderViewInteractionSettings')
print(dir(interactionProxy))
interactionProxy.Camera3DManipulators = [
'Rotate', 'Pan', 'Zoom', 'Pan', 'Roll', 'Pan', 'Zoom', 'Rotate',
'Zoom'
]
print("done with initialize()")
# set scalar coloring
pv.ColorBy(ablnek5000Display, ('POINTS', 'velocity_mag'))
# rescale color and/or opacity maps used to include current data range
ablnek5000Display.RescaleTransferFunctionToDataRange(True, False)
# show color bar/color legend
ablnek5000Display.SetScalarBarVisibility(renderView1, True)
# get color transfer function/color map for 'velocity_mag'
velocity_magLUT = pv.GetColorTransferFunction('velocity_mag')
velocity_magLUT.RGBPoints = [0.0010371223324909806, 0.231373, 0.298039, 0.752941, 0.7069325454649515, 0.865003, 0.865003, 0.865003, 1.412827968597412, 0.705882, 0.0156863, 0.14902]
velocity_magLUT.ScalarRangeInitialized = 1.0
# get opacity transfer function/opacity map for 'velocity_mag'
velocity_magPWF = pv.GetOpacityTransferFunction('velocity_mag')
velocity_magPWF.Points = [0.0010371223324909806, 0.0, 0.5, 0.0, 1.412827968597412, 1.0, 0.5, 0.0]
velocity_magPWF.ScalarRangeInitialized = 1
# Apply a preset using its name. Note this may not work as expected when presets have duplicate names.
velocity_magLUT.ApplyPreset('Inferno (matplotlib)', True)
# get color legend/bar for velocity_magLUT in view renderView1
velocity_magLUTColorBar = pv.GetScalarBar(velocity_magLUT, renderView1)
velocity_magLUTColorBar.Title = 'velocity_mag'
velocity_magLUTColorBar.ComponentTitle = ''
# change scalar bar placement
velocity_magLUTColorBar.WindowLocation = 'AnyLocation'
velocity_magLUTColorBar.Position = [0.9087500000000001, 0.5390781563126252]
velocity_magLUTColorBar.ScalarBarLength = 0.3300000000000002