def __init__(self, format_string, strip_strings=True):
"""
Sets the format string and determines how we will read and write
strings using this format
"""
self.format = format_string
self.strip_strings = strip_strings # for ease of copying
# Define a function that processes all arguments prior to adding them to
# the returned list. By default, do nothing, but this allows us to
# optionally strip whitespace from strings.
self.process_method = lambda x: x
if FortranFormat.strre.match(format_string):
rematch = FortranFormat.strre.match(format_string)
# replace our write() method with write_string to force left-justify
self.type, self.write = str, self._write_string
nitems, itemlen = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.fmt = '%s'
# See if we want to strip the strings
if strip_strings: self.process_method = lambda x: x.strip()
elif FortranFormat.intre.match(format_string):
self.type = int
rematch = FortranFormat.intre.match(format_string)
nitems, itemlen = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.fmt = '%%%dd' % self.itemlen
elif FortranFormat.floatre.match(format_string):
self.type = float
rematch = FortranFormat.floatre.match(format_string)
nitems, itemlen, num_decimals = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.num_decimals = int(num_decimals)
if 'F' in format_string.upper():
self.fmt = '%%%s.%sF' % (self.itemlen, self.num_decimals)
else:
self.fmt = '%%%s.%sE' % (self.itemlen, self.num_decimals)
elif FortranFormat.floatre2.match(format_string):
self.type = float
rematch = FortranFormat.floatre2.match(format_string)
nitems, itemlen, num_decimals = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.num_decimals = int(num_decimals)
if 'F' in format_string.upper():
self.fmt = '%%%s.%sF' % (self.itemlen, self.num_decimals)
else:
self.fmt = '%%%s.%sE' % (self.itemlen, self.num_decimals)
else:
# We tried... now just use the fortranformat package
self._reader = FortranRecordReader(format_string)
self._writer = FortranRecordWriter(format_string)
self.write = self._write_ffwriter
self.read = self._read_ffreader
def __init__(self, format_string, strip_strings=True):
"""
Sets the format string and determines how we will read and write
strings using this format
"""
self.format = format_string
self.strip_strings = strip_strings # for ease of copying
# Define a function that processes all arguments prior to adding them to
# the returned list. By default, do nothing, but this allows us to
# optionally strip whitespace from strings.
self.process_method = lambda x: x
if FortranFormat.strre.match(format_string):
rematch = FortranFormat.strre.match(format_string)
# replace our write() method with write_string to force left-justify
self.type, self.write = str, self._write_string
nitems, itemlen = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.fmt = '%s'
# See if we want to strip the strings
if strip_strings: self.process_method = lambda x: x.strip()
elif FortranFormat.intre.match(format_string):
self.type = int
rematch = FortranFormat.intre.match(format_string)
nitems, itemlen = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.fmt = '%%%dd' % self.itemlen
elif FortranFormat.floatre.match(format_string):
self.type = float
rematch = FortranFormat.floatre.match(format_string)
nitems, itemlen, num_decimals = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.num_decimals = int(num_decimals)
if 'F' in format_string.upper():
self.fmt = '%%%s.%sF' % (self.itemlen, self.num_decimals)
else:
self.fmt = '%%%s.%sE' % (self.itemlen, self.num_decimals)
elif FortranFormat.floatre2.match(format_string):
self.type = float
rematch = FortranFormat.floatre2.match(format_string)
nitems, itemlen, num_decimals = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.num_decimals = int(num_decimals)
if 'F' in format_string.upper():
self.fmt = '%%%s.%sF' % (self.itemlen, self.num_decimals)
else:
self.fmt = '%%%s.%sE' % (self.itemlen, self.num_decimals)
else:
# We tried... now just use the fortranformat package
self._reader = FortranRecordReader(format_string)
self._writer = FortranRecordWriter(format_string)
self.write = self._write_ffwriter
self.read = self._read_ffreader
class FortranFormat(object):
"""
Processes Fortran format strings according to the Fortran specification for
such formats. This object handles reading and writing data with any valid
Fortran format. It does this by using the `fortranformat` project
[https://bitbucket.org/brendanarnold/py-fortranformat].
However, while `fortranformat` is very general and adheres well to the
standard, it is very slow. As a result, simple, common format strings have
been optimized and processes reads and writes between 3 and 5 times faster.
The format strings (case-insensitive) of the following form (where # can be
replaced by any number) are optimized:
- #E#.#
- #D#.#
- #F#.#
- #(F#.#)
- #a#
- #I#
Parameters
----------
format_string : str
The Fortran Format string to process
strip_strings : bool=True
If True, strings are stripped before being processed by stripping
(only) trailing whitespace
"""
strre = re.compile(r'(\d+)?a(\d+)$', re.I)
intre = re.compile(r'(\d+)?i(\d+)$', re.I)
floatre = re.compile(r'(\d+)?[edf](\d+)\.(\d+)$', re.I)
floatre2 = re.compile(r'(\d+)?\([edf](\d+)\.(\d+)\)$', re.I)
#===================================================
def __init__(self, format_string, strip_strings=True):
"""
Sets the format string and determines how we will read and write
strings using this format
"""
self.format = format_string
self.strip_strings = strip_strings # for ease of copying
# Define a function that processes all arguments prior to adding them to
# the returned list. By default, do nothing, but this allows us to
# optionally strip whitespace from strings.
self.process_method = lambda x: x
if FortranFormat.strre.match(format_string):
rematch = FortranFormat.strre.match(format_string)
# replace our write() method with write_string to force left-justify
self.type, self.write = str, self._write_string
nitems, itemlen = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.fmt = '%s'
# See if we want to strip the strings
if strip_strings: self.process_method = lambda x: x.strip()
elif FortranFormat.intre.match(format_string):
self.type = int
rematch = FortranFormat.intre.match(format_string)
nitems, itemlen = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.fmt = '%%%dd' % self.itemlen
elif FortranFormat.floatre.match(format_string):
self.type = float
rematch = FortranFormat.floatre.match(format_string)
nitems, itemlen, num_decimals = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.num_decimals = int(num_decimals)
if 'F' in format_string.upper():
self.fmt = '%%%s.%sF' % (self.itemlen, self.num_decimals)
else:
self.fmt = '%%%s.%sE' % (self.itemlen, self.num_decimals)
elif FortranFormat.floatre2.match(format_string):
self.type = float
rematch = FortranFormat.floatre2.match(format_string)
nitems, itemlen, num_decimals = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.num_decimals = int(num_decimals)
if 'F' in format_string.upper():
self.fmt = '%%%s.%sF' % (self.itemlen, self.num_decimals)
else:
self.fmt = '%%%s.%sE' % (self.itemlen, self.num_decimals)
else:
# We tried... now just use the fortranformat package
self._reader = FortranRecordReader(format_string)
self._writer = FortranRecordWriter(format_string)
self.write = self._write_ffwriter
self.read = self._read_ffreader
#===================================================
def __copy__(self):
return type(self)(self.format, self.strip_strings)
#===================================================
def __str__(self):
return self.format
def __repr__(self):
return "<%s: %s>" % (type(self).__name__, self.format)
#===================================================
def write(self, items, dest):
"""
Writes an iterable of data (or a single item) to the passed file-like
object
Parameters
----------
items : iterable or single float/str/int
These are the objects to write in this format. The types of each
item should match the type specified in this Format for that
argument
dest : file or file-like
This is the file to write the data to. It must have a `write` method
or an AttributeError will be raised
Notes
-----
This method may be replaced with _write_string (for #a#-style formats)
or _write_ffwriter in the class initializer if no optimization is
provided for this format, but the call signatures and behavior are the
same for each of those functions.
"""
if hasattr(items, '__iter__') and not isinstance(items, string_types):
mod = self.nitems - 1
for i, item in enumerate(items):
dest.write(self.fmt % item)
if i % self.nitems == mod:
dest.write('\n')
if i % self.nitems != mod:
dest.write('\n')
else:
dest.write(self.fmt % items)
dest.write('\n')
#===================================================
def _write_string(self, items, dest):
""" Writes a list/tuple of strings """
if hasattr(items, '__iter__') and not isinstance(items, string_types):
mod = self.nitems - 1
for i, item in enumerate(items):
dest.write((self.fmt % item).ljust(self.itemlen))
if i % self.nitems == mod:
dest.write('\n')
if i % self.nitems != mod:
dest.write('\n')
else:
dest.write((self.fmt % items).ljust(self.itemlen))
dest.write('\n')
#===================================================
def _read_nostrip(self, line):
"""
Reads the line and returns converted data. Special-cased for flags that
may contain 'blank' data. ugh.
"""
line = line.rstrip('\n')
nitems = int(ceil(len(line) / self.itemlen))
ret = [0 for i in range(nitems)]
start, end = 0, self.itemlen
for i in range(nitems):
ret[i] = self.process_method(self.type(line[start:end]))
start = end
end += self.itemlen
return ret
#===================================================
def read(self, line):
""" Reads the line and returns the converted data """
line = line.rstrip()
nitems = int(ceil(len(line) / self.itemlen))
ret = [0 for i in range(nitems)]
start, end = 0, self.itemlen
for i in range(nitems):
ret[i] = self.process_method(self.type(line[start:end]))
start = end
end += self.itemlen
return ret
#===================================================
def _read_ffreader(self, line):
""" Reads the line and returns the converted data """
return self._reader.read(line.rstrip())
#===================================================
def _write_ffwriter(self, items, dest):
dest.write('%s\n' % self._writer.write(items))
#===================================================
def __eq__(self, other):
return (self.format == other.format
and self.strip_strings == other.strip_strings)
#===================================================
def __hash__(self):
return hash((self.format, self.strip_strings))
#===================================================
def __getstate__(self):
return dict(format=self.format, strip_strings=self.strip_strings)
def __setstate__(self, d):
self.__init__(d['format'], d['strip_strings'])
class FortranFormat(object):
"""
Processes Fortran format strings according to the Fortran specification for
such formats. This object handles reading and writing data with any valid
Fortran format. It does this by using the `fortranformat` project
[https://bitbucket.org/brendanarnold/py-fortranformat].
However, while `fortranformat` is very general and adheres well to the
standard, it is very slow. As a result, simple, common format strings have
been optimized and processes reads and writes between 3 and 5 times faster.
The format strings (case-insensitive) of the following form (where # can be
replaced by any number) are optimized:
- #E#.#
- #D#.#
- #F#.#
- #(F#.#)
- #a#
- #I#
Parameters
----------
format_string : str
The Fortran Format string to process
strip_strings : bool=True
If True, strings are stripped before being processed by stripping
(only) trailing whitespace
"""
strre = re.compile(r'(\d+)?a(\d+)$', re.I)
intre = re.compile(r'(\d+)?i(\d+)$', re.I)
floatre = re.compile(r'(\d+)?[edf](\d+)\.(\d+)$', re.I)
floatre2 = re.compile(r'(\d+)?\([edf](\d+)\.(\d+)\)$', re.I)
#===================================================
def __init__(self, format_string, strip_strings=True):
"""
Sets the format string and determines how we will read and write
strings using this format
"""
self.format = format_string
self.strip_strings = strip_strings # for ease of copying
# Define a function that processes all arguments prior to adding them to
# the returned list. By default, do nothing, but this allows us to
# optionally strip whitespace from strings.
self.process_method = lambda x: x
if FortranFormat.strre.match(format_string):
rematch = FortranFormat.strre.match(format_string)
# replace our write() method with write_string to force left-justify
self.type, self.write = str, self._write_string
nitems, itemlen = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.fmt = '%s'
# See if we want to strip the strings
if strip_strings: self.process_method = lambda x: x.strip()
elif FortranFormat.intre.match(format_string):
self.type = int
rematch = FortranFormat.intre.match(format_string)
nitems, itemlen = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.fmt = '%%%dd' % self.itemlen
elif FortranFormat.floatre.match(format_string):
self.type = float
rematch = FortranFormat.floatre.match(format_string)
nitems, itemlen, num_decimals = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.num_decimals = int(num_decimals)
if 'F' in format_string.upper():
self.fmt = '%%%s.%sF' % (self.itemlen, self.num_decimals)
else:
self.fmt = '%%%s.%sE' % (self.itemlen, self.num_decimals)
elif FortranFormat.floatre2.match(format_string):
self.type = float
rematch = FortranFormat.floatre2.match(format_string)
nitems, itemlen, num_decimals = rematch.groups()
if nitems is None:
self.nitems = 1
else:
self.nitems = int(nitems)
self.itemlen = int(itemlen)
self.num_decimals = int(num_decimals)
if 'F' in format_string.upper():
self.fmt = '%%%s.%sF' % (self.itemlen, self.num_decimals)
else:
self.fmt = '%%%s.%sE' % (self.itemlen, self.num_decimals)
else:
# We tried... now just use the fortranformat package
self._reader = FortranRecordReader(format_string)
self._writer = FortranRecordWriter(format_string)
self.write = self._write_ffwriter
self.read = self._read_ffreader
#===================================================
def __copy__(self):
return type(self)(self.format, self.strip_strings)
#===================================================
def __str__(self):
return self.format
def __repr__(self):
return "<%s: %s>" % (type(self).__name__, self.format)
#===================================================
def write(self, items, dest):
"""
Writes an iterable of data (or a single item) to the passed file-like
object
Parameters
----------
items : iterable or single float/str/int
These are the objects to write in this format. The types of each
item should match the type specified in this Format for that
argument
dest : file or file-like
This is the file to write the data to. It must have a `write` method
or an AttributeError will be raised
Notes
-----
This method may be replaced with _write_string (for #a#-style formats)
or _write_ffwriter in the class initializer if no optimization is
provided for this format, but the call signatures and behavior are the
same for each of those functions.
"""
if hasattr(items, '__iter__') and not isinstance(items, string_types):
mod = self.nitems - 1
for i, item in enumerate(items):
dest.write(self.fmt % item)
if i % self.nitems == mod:
dest.write('\n')
if i % self.nitems != mod:
dest.write('\n')
else:
dest.write(self.fmt % item)
dest.write('\n')
#===================================================
def _write_string(self, items, dest):
""" Writes a list/tuple of strings """
if hasattr(items, '__iter__') and not isinstance(items, string_types):
mod = self.nitems - 1
for i, item in enumerate(items):
dest.write((self.fmt % item).ljust(self.itemlen))
if i % self.nitems == mod:
dest.write('\n')
if i % self.nitems != mod:
dest.write('\n')
else:
dest.write((self.fmt % item).ljust(self.itemlen))
dest.write('\n')
#===================================================
def _read_nostrip(self, line):
"""
Reads the line and returns converted data. Special-cased for flags that
may contain 'blank' data. ugh.
"""
line = line.rstrip('\n')
nitems = int(ceil(len(line) / self.itemlen))
ret = [0 for i in range(nitems)]
start, end = 0, self.itemlen
for i in range(nitems):
ret[i] = self.process_method(self.type(line[start:end]))
start = end
end += self.itemlen
return ret
#===================================================
def read(self, line):
""" Reads the line and returns the converted data """
line = line.rstrip()
nitems = int(ceil(len(line) / self.itemlen))
ret = [0 for i in range(nitems)]
start, end = 0, self.itemlen
for i in range(nitems):
ret[i] = self.process_method(self.type(line[start:end]))
start = end
end += self.itemlen
return ret
#===================================================
def _read_ffreader(self, line):
""" Reads the line and returns the converted data """
return self._reader.read(line.rstrip())
#===================================================
def _write_ffwriter(self, items, dest):
dest.write('%s\n' % self._writer.write(items))