def search(self, template: str) -> Result: """Search the :class:`Element <Element>` for the given Parse template. :param template: The Parse template to use. """ return parse_search(template, self.html)
def search(self, term, db="pubmed", field=None, daterange=None, dbtype=None): set_klass = _get_recordset_constructor(db, dbtype) infile = self.eutils.esearch( term=term, db=db, field=field, retstart=0, retmax=0, daterange=daterange, usehistory=1, webenv=self.webenv_ref[0], ) searchinfo = parse.parse_search(infile, self.webenv_ref) if searchinfo.query_key is not None: cookie = HistoryCookie(db, self.webenv_ref, searchinfo.query_key) else: assert searchinfo.count == 0 cookie = HistoryCookie(db, None, None) recordset = set_klass(self.eutils, cookie, 0, searchinfo.count, searchinfo) # won't have a query_key if the search turned up empty if searchinfo.query_key is not None: self._check_for_cache_reset(searchinfo.query_key) self.query_history[searchinfo.query_key] = recordset return recordset
def search(self, template): """Search the :class:`Element <Element>` for the given Parse template. :param template: The Parse template to use. """ if not isinstance(template, str): raise TypeError("Expected string, got %r" % type(template)) return parse_search(template, self.html)
def search(self, term, db = "pubmed", field = None, retstart = 0, retmax = 20, daterange = None, dbtype = None, ): """do an Entrez search The parameters are: 'term' -- the query string in the Entrez query language; see http://www.ncbi.nlm.nih.gov/entrez/query/static/help/pmhelp.html 'db' -- the database to search 'field' -- the field to use for unqualified words Eg, "dalke[au] AND gene" with field==None becomes dalke[au] AND (genes[MeSH Terms] OR gene[Text Word] and "dalke[au] AND gene" with field=="au" becomes dalke[au] AND genes[Author] (Yes, I think the first "au" should be "Author" too) 'retstart' -- include identifiers in the output, starting with position 'retstart' (normally starts with 0) 'retmax' -- return at most 'retmax' identifiers in the output (if not specified, NCBI returns 20 identifiers) 'daterange' -- a date restriction; either WithinNDays or DateRange 'dbtype' -- (optional) the database type (Config.PUBLICATION_TYPE or SEQUENCE_TYPE). Overrides the type based on the 'db' """ set_klass = _get_recordset_constructor(db, dbtype) infile = self.eutils.esearch( term = term, db = db, field = field, retstart = retstart, retmax = retmax, daterange = daterange) searchinfo = parse.parse_search(infile, [None]) dbids = Datatypes.DBIds(db, searchinfo.ids) return set_klass(self.eutils, dbids, searchinfo)
def search( self, term, db="pubmed", field=None, retstart=0, retmax=20, daterange=None, dbtype=None, ): """do an Entrez search The parameters are: 'term' -- the query string in the Entrez query language; see http://www.ncbi.nlm.nih.gov/entrez/query/static/help/pmhelp.html 'db' -- the database to search 'field' -- the field to use for unqualified words Eg, "dalke[au] AND gene" with field==None becomes dalke[au] AND (genes[MeSH Terms] OR gene[Text Word] and "dalke[au] AND gene" with field=="au" becomes dalke[au] AND genes[Author] (Yes, I think the first "au" should be "Author" too) 'retstart' -- include identifiers in the output, starting with position 'retstart' (normally starts with 0) 'retmax' -- return at most 'retmax' identifiers in the output (if not specified, NCBI returns 20 identifiers) 'daterange' -- a date restriction; either WithinNDays or DateRange 'dbtype' -- (optional) the database type (Config.PUBLICATION_TYPE or SEQUENCE_TYPE). Overrides the type based on the 'db' """ set_klass = _get_recordset_constructor(db, dbtype) infile = self.eutils.esearch(term=term, db=db, field=field, retstart=retstart, retmax=retmax, daterange=daterange) searchinfo = parse.parse_search(infile, [None]) dbids = Datatypes.DBIds(db, searchinfo.ids) return set_klass(self.eutils, dbids, searchinfo)
def search(self, term, db = "pubmed", field = None, daterange = None, dbtype = None ): set_klass = _get_recordset_constructor(db, dbtype) infile = self.eutils.esearch( term = term, db = db, field = field, retstart = 0, retmax = 0, daterange = daterange, usehistory = 1, webenv = self.webenv_ref[0], ) searchinfo = parse.parse_search(infile, self.webenv_ref) if searchinfo.query_key is not None: cookie = HistoryCookie(db, self.webenv_ref, searchinfo.query_key) else: assert searchinfo.count == 0 cookie = HistoryCookie(db, None, None) recordset = set_klass(self.eutils, cookie, 0, searchinfo.count, searchinfo) # won't have a query_key if the search turned up empty if searchinfo.query_key is not None: self._check_for_cache_reset(searchinfo.query_key) self.query_history[searchinfo.query_key] = recordset return recordset
def search(self, template): """Searches the element for the given parse template.""" return parse_search(template, self.html)
def search(self, template): """Searches the :class:`Element <Element>` for the given parse template.""" return parse_search(template, self.html)
def parse(self, template: str): return parse_search(template, self.html)[0]
def search(self, template: str) -> Result: """Searches the :class:`Element <Element>` for the given parse template.""" return parse_search(template, self.html)