def output_selected_sequences(self, selectedSequences):
outputFile = self.process_setup(selectedSequences,
'SequenceWriter',
suffix='fasta')
if self.output_files_exist(output_file=outputFile):
return outputFile
copy_fasta_list(selectedSequences, outputFile)
self.process_cleanup(output_file=outputFile)
return outputFile
def output_final_sequences( self, finalSequenceList ):
outputFile = self.process_setup( finalSequenceList,
'SequenceWriter',
suffix='fasta' )
if self.output_files_exist(output_file=outputFile):
return outputFile
copy_fasta_list( finalSequenceList, outputFile )
self.process_cleanup(output_file=outputFile)
return outputFile
def output_selected_sequences( self, selectedSequences ):
outputFile = self.process_setup( selectedSequences,
'SequenceWriter',
suffix='fasta' )
if self.output_files_exist(output_file=outputFile):
return outputFile
copy_fasta_list( selectedSequences, outputFile )
self.process_cleanup(output_file=outputFile)
return outputFile
def output_final_sequences(self, finalSequenceList):
outputFile = self.process_setup(finalSequenceList,
'SequenceWriter',
suffix='fasta')
if self.output_files_exist(output_file=outputFile):
return outputFile
copy_fasta_list(finalSequenceList, outputFile)
self.process_cleanup(output_file=outputFile)
return outputFile