def kill_clients(self):
map_name = self.map_name
for client in self.__clients():
try:
pbs.qdel(client)
except OSError:
pass
def kill_all_jobs_named(username, name):
for job in pbs.qstat(user=username):
if job.name.find(name) >= 0:
print 'Killing ', job
pbs.qdel(job)
def qdel_range(min_id, max_id):
for job_stat in pbs.qstat():
if int(job_stat.id) >= min_id and int(job_stat.id) <= max_id:
print 'Deleting %s ' % job_stat
pbs.qdel(job_stat)
def main(argv):
parser = optparse.OptionParser()
parser.add_option('-o', dest='output_file_name', default=None,
help="Destination file for the output. ")
parser.add_option('-i', action='store', dest='input_file_name',
help="Write input file contents to command's stdin.")
parser.add_option('-v', action='store_true', dest='verbose', default=False,
help="Display the script to be submitted.")
parser.add_option('-q', action='store_true', dest='quiet', default=False,
help="Do not include information about processor nodes in the output, or the state of the job.")
parser.add_option('-w', action='store', dest='script_name', default=None,
help="Save the script as this file name.")
parser.add_option('-x', action='store_true', dest='dont_submit', default=False,
help="Don't submit the job. This is really only useful when combined with '-w'.")
parser.add_option('-W', action='store_true', dest='wait', default=False,
help="Wait for the job to finish, and display its output.")
parser.add_option('-n', action='store', dest='job_name', default=None,
help="PBS jobname")
parser.add_option('-p', action='store', dest='numcpu',
default=None,
help="Number of cpus to use.")
parser.add_option('--num-nodes', action='store', dest='numnodes',
default=None,
help="Number of nodes to use.")
expect_another = False
for idx, arg in enumerate(argv):
if expect_another:
expect_another = False
continue
if arg[0] == '-':
if arg[-1] in ['o', 'i', 'w', 'n', 'p']:
expect_another = True
continue
break
if arg[0] == '-':
# no command was given
idx += 1
(options, args) = parser.parse_args(argv[:idx])
command_parts = argv[idx:]
command = ' '.join(command_parts)
with tempfile_util.Session(local=True) as session:
# Pick a file to output to
if options.output_file_name is not None:
output_file_name = options.output_file_name
wait = False
elif options.script_name:
output_file_name = options.script_name + '.out'
session.add_name(output_file_name + '.err')
else:
output_file_name = session.temp_file_name('.submit_command.out')
session.add_name(output_file_name + '.err')
if options.script_name:
print 'Outputting to ', output_file_name
wait = True
# Pick a script name
if options.script_name is not None:
script_file_name = options.script_name
else:
script_file_name = session.temp_file_name('.submit_command.pbs')
job_id = None
if options.job_name is not None:
job_name = options.job_name
elif output_file_name is not None:
job_name = output_file_name
else:
job_name = filter(lambda x: x.isalpha(), command_parts[0])
# Create the script
run_command_here(script_file_name, command, input_file_name=options.input_file_name, output_file_name=output_file_name, job_name=job_name, verbose=not options.quiet, numcpu=options.numcpu, numnodes=options.numnodes)
if options.verbose:
with open(script_file_name) as script_file:
print script_file.read()
# Maybe submit it
if options.script_name is not None:
print 'Wrote %s.' % script_file_name
if options.dont_submit:
return
else:
try:
if not options.quiet:
print 'Submitting...'
job_id, = nice_submit.submit_files_until_done([script_file_name], wait_for_all=False,
quiet=options.quiet)
# If they directed the output, just exit
if not options.wait:
return
if not options.quiet:
print 'Waiting on job ', job_id, ' to finish running.'
pbs.qwait(job_id)
except KeyboardInterrupt:
print '^C'
if job_id:
print 'Killing ', job_id
pbs.qdel(job_id)
if os.path.exists(output_file_name):
with open(output_file_name) as output_file:
print output_file.read()
else:
print "Output file doesn't seem to exist! Try:\ncat %s\n" % output_file_name
if os.path.exists(output_file_name + '.err'):
with open(output_file_name + '.err') as err_file:
print err_file.read()
def kill_all(source):
for jobid in pbs.strip_pbs_ids(source):
print 'Killing %s' % jobid
pbs.qdel(jobid)
def kill_all_user_jobs(username):
for job in pbs.qstat(user=username):
print 'Killing ', job
pbs.qdel(job)
