Exemple #1
0
 def test_re_findall(self):
     self.assertEqual(re.findall(":+", "abc"), [])
     self.assertEqual(re.findall(":+", "a:b::c:::d"), [":", "::", ":::"])
     self.assertEqual(re.findall("(:+)", "a:b::c:::d"), [":", "::", ":::"])
     self.assertEqual(re.findall("(:)(:*)", "a:b::c:::d"), [(":", ""),
                                                            (":", ":"),
                                                            (":", "::")])
Exemple #2
0
def main():
    seq = stdin.read()
    write = stdout.write
    ilen = len(seq)

    seq = sub('>.*\n|\n', '', seq)
    clen = len(seq)

    variants = (
          'agggtaaa|tttaccct',
          '[cgt]gggtaaa|tttaccc[acg]',
          'a[act]ggtaaa|tttacc[agt]t',
          'ag[act]gtaaa|tttac[agt]ct',
          'agg[act]taaa|ttta[agt]cct',
          'aggg[acg]aaa|ttt[cgt]ccct',
          'agggt[cgt]aa|tt[acg]accct',
          'agggta[cgt]a|t[acg]taccct',
          'agggtaa[cgt]|[acg]ttaccct')
    for f in variants:
        write(f + ' ' +str(len(findall(f, seq))).encode('latin1') + '\n')

    subst = {
          'B' : '(c|g|t)', 'D' : '(a|g|t)',   'H' : '(a|c|t)', 'K' : '(g|t)',
          'M' : '(a|c)',   'N' : '(a|c|g|t)', 'R' : '(a|g)',   'S' : '(c|g)',
          'V' : '(a|c|g)', 'W' : '(a|t)',     'Y' : '(c|t)'}
    for f, r in subst.items():
        seq = sub(f, r, seq)
    write('\n')
    write(str(ilen).encode('latin1') + '\n')
    write(str(clen).encode('latin1') + '\n')
    write(str(len(seq)).encode('latin1') + '\n')
Exemple #3
0
 def test_re_escape_non_ascii_bytes(self):
     b = u'y\u2620y\u2620y'.encode('utf-8')
     b_escaped = re.escape(b)
     self.assertEqual(b_escaped, b'y\\\xe2\\\x98\\\xa0y\\\xe2\\\x98\\\xa0y')
     self.assertMatch(b_escaped, b)
     res = re.findall(re.escape(u'\u2620'.encode('utf-8')), b)
     self.assertEqual(len(res), 2)
Exemple #4
0
 def test_bug_117612(self):
     self.assertEqual(re.findall(r"(a|(b))", "aba"),
                      [("a", ""),("b", "b"),("a", "")])