def test_simple_visualization(data_file_Fujita, condition_file_Fujita):
plot_measurements_by_observable(data_file_Fujita, condition_file_Fujita)
plot_measurements_by_observable(data_file_Fujita,
condition_file_Fujita,
plotted_noise=PROVIDED)
def test_visualization_raises(data_file_Fujita, condition_file_Fujita,
data_file_Fujita_wrongNoise):
sim_cond_num_list = [[0, 1, 2], [0, 2, 3], [0, 3, 4], [0, 4, 5]]
sim_cond_id_list = [['model1_data1'], ['model1_data2', 'model1_data3'],
['model1_data4', 'model1_data5'], ['model1_data6']]
observable_num_list = [[0], [1], [2], [0, 2], [1, 2]]
observable_id_list = [['pS6_tot'], ['pEGFR_tot'], ['pAkt_tot']]
error_counter = 0
# Combining simulation condition numbers and IDs should not be allowed
try:
plot_data_and_simulation(data_file_Fujita,
condition_file_Fujita,
sim_cond_num_list=sim_cond_num_list,
sim_cond_id_list=sim_cond_id_list)
except NotImplementedError as ErrMsg:
assert (ErrMsg.args[0] == 'Either specify a list of simulation '
'condition IDs or a list of simulation '
'condition numbers, but not both. '
'Stopping.')
error_counter += 1
assert (error_counter == 1)
# Combining observable numbers and IDs should not be allowed
try:
plot_data_and_simulation(data_file_Fujita,
condition_file_Fujita,
observable_num_list=observable_num_list,
observable_id_list=observable_id_list)
except NotImplementedError as ErrMsg:
assert (ErrMsg.args[0] == 'Either specify a list of observable IDs or '
'a list of observable numbers, but not both. '
'Stopping.')
error_counter += 1
assert (error_counter == 2)
# Combining observable and simulation conditions numbers or IDs should not
# be allowed
try:
plot_data_and_simulation(data_file_Fujita,
condition_file_Fujita,
sim_cond_num_list=observable_num_list,
observable_num_list=observable_num_list)
except NotImplementedError as ErrMsg:
assert (
ErrMsg.args[0] == 'Plotting without visualization specification'
' file and datasetId can be performed via '
'grouping by simulation conditions OR '
'observables, but not both. Stopping.')
error_counter += 1
assert (error_counter == 3)
try:
plot_data_and_simulation(data_file_Fujita,
condition_file_Fujita,
sim_cond_id_list=observable_id_list,
observable_id_list=observable_id_list)
except NotImplementedError as ErrMsg:
assert (
ErrMsg.args[0] == 'Plotting without visualization specification'
' file and datasetId can be performed via '
'grouping by simulation conditions OR '
'observables, but not both. Stopping.')
error_counter += 1
assert (error_counter == 4)
# If no numerical noise is provided, it should not work to plot it
try:
plot_measurements_by_observable(data_file_Fujita_wrongNoise,
condition_file_Fujita,
plotted_noise='provided')
except NotImplementedError as ErrMsg:
assert (ErrMsg.args[0] == "No numerical noise values provided in the "
"measurement table. Stopping.")
error_counter += 1
assert (error_counter == 5)