def test_transfer_metadata_moves_sample_metadata_between_biom_tables(self):
"""transfer_metadata moves sample metadata values between BIOM format tables"""
t1 = self.otu_table1
exp = self.otu_table1_with_metadata
actual = transfer_metadata(self.otu_table1_with_metadata,self.otu_table1,\
"SampleMetadata","SampleMetadata",verbose=False)
actual_md = map(dict, sorted([md for md in actual.SampleMetadata]))
exp_md = map(dict, sorted([md for md in exp.SampleMetadata]))
for i, md in enumerate(actual_md):
self.assertEqualItems(md, exp_md[i])
for i, md in enumerate(exp_md):
self.assertEqualItems(md, actual_md[i])
def test_transfer_metadata_moves_observation_metadata_between_biom_tables(self):
"""transfer_metadata moves observation metadata values between BIOM format tables"""
t1 = self.genome_table1
exp = self.genome_table1_with_metadata
actual = transfer_metadata(self.genome_table1_with_metadata,\
self.genome_table1,"observation","observation",verbose=False)
actual_md = map(dict,sorted([md for md in actual.metadata(axis='observation')]))
exp_md = map(dict,sorted([md for md in exp.metadata(axis='observation')]))
for i,md in enumerate(actual_md):
self.assertEqualItems(md,exp_md[i])
for i,md in enumerate(exp_md):
self.assertEqualItems(md,actual_md[i])
def test_transfer_metadata_moves_observation_metadata_between_biom_tables(self):
"""transfer_metadata moves observation metadata values between BIOM format tables"""
t1 = self.genome_table1
exp = self.genome_table1_with_metadata
actual = transfer_metadata(self.genome_table1_with_metadata,\
self.genome_table1,"observation","observation",verbose=False)
actual_md = map(dict,sorted([md for md in actual.metadata(axis='observation')]))
exp_md = map(dict,sorted([md for md in exp.metadata(axis='observation')]))
for i,md in enumerate(actual_md):
self.assertEqualItems(md,exp_md[i])
for i,md in enumerate(exp_md):
self.assertEqualItems(md,actual_md[i])
def test_transfer_metadata_moves_sample_metadata_between_biom_tables(self):
"""transfer_metadata moves sample metadata values between BIOM format tables"""
t1 = self.otu_table1
exp = self.otu_table1_with_metadata
actual = transfer_metadata(self.otu_table1_with_metadata,self.otu_table1,\
"sample","sample",verbose=False)
actual_md = map(dict,sorted([md for md in actual.metadata()]))
exp_md = map(dict,sorted([md for md in exp.metadata()]))
for i,md in enumerate(actual_md):
self.assertEqualItems(md,exp_md[i])
for i,md in enumerate(exp_md):
self.assertEqualItems(md,actual_md[i])
