def cli(ctx, target, path, **kwds):
"""Short-cut to quickly clone, fork, and branch a relevant Github repo.
For instance, the following will clone, fork, and branch the tools-iuc
repository to allow a subsequent pull request to fix a problem with bwa.
\b
$ planemo clone --branch bwa-fix tools-iuc
$ cd tools-iuc
$ # Make changes.
$ git add -p # Add desired changes.
$ git commit -m "Fix bwa problem."
$ planemo pull_request -m "Fix bwa problem."
These changes do require that a github access token is
specified in ~/.planemo.yml. An access token can be generated by going
to https://github.com/settings/tokens.
"""
if target in CLONE_GITHUB_TARGETS:
target = "https://github.com/%s" % CLONE_GITHUB_TARGETS[target]
# Pretty hacky that this path isn't treated as None.
if path is None or path.endswith("__NONE__"):
path = target.split("/")[-1]
github_util.clone_fork_branch(ctx, target, path, **kwds)
def __init__(self, ctx, **kwds):
output_directory = kwds["output_directory"]
pr_titles = []
target_repository = None
do_pull_request = kwds.get("pull_request", True)
if output_directory is None:
target_repository = os.path.join(ctx.workspace, REGISTERY_TARGET_NAME)
output_directory = os.path.join(target_repository, REGISTERY_TARGET_PATH)
clone_fork_branch(
ctx,
"https://github.com/%s" % REGISTERY_REPOSITORY,
target_repository,
fork=do_pull_request,
)
pr_titles = [pr.title for pr in open_prs(ctx)]
self.do_pull_request = do_pull_request
self.pr_titles = pr_titles
self.output_directory = output_directory
self.target_repository = target_repository
def cli(ctx, target, path, **kwds):
"""Short-cut to quickly clone, fork, and branch a relevant Github repo.
For instance, the following will clone, fork, and branch the tools-iuc
repository to allow a subsequent pull request to fix a problem with bwa.
::
$ planemo clone --branch bwa-fix tools-iuc
$ cd tools-iuc
$ # Make changes.
$ git add -p # Add desired changes.
$ git commit -m "Fix bwa problem."
$ planemo pull_request -m "Fix bwa problem."
These changes do require that a github username and password are
specified in ~/.planemo.yml.
"""
if target in CLONE_GITHUB_TARGETS:
target = "https://github.com/%s" % CLONE_GITHUB_TARGETS[target]
# Pretty hacky that this path isn't treated as None.
if path is None or path.endswith("__NONE__"):
path = target.split("/")[-1]
github_util.clone_fork_branch(ctx, target, path, **kwds)