def _init():
"""
This must be called once before any work
"""
RadiometryContext.struct_fixup()
if local.env.get("PLASTER_C_COMPILE"):
with local.cwd(c_radiometry_path):
fp = StringIO()
with redirect_stdout(fp):
print(
f"// This file was code-generated by sigproc_v2.c_radiometry.c_radiometry.load_lib and should be version controlled"
)
print()
print("#ifndef RADIOMETRY_H")
print("#define RADIOMETRY_H")
print()
print('#include "stdint.h"')
print('#include "c_common.h"')
print()
RadiometryContext.struct_emit_header(fp)
print("#endif")
header_file_path = "./_radiometry.h"
existing_h = utils.load(header_file_path,
return_on_non_existing="")
if existing_h != fp.getvalue():
utils.save(header_file_path, fp.getvalue())
build_dev()
def _init():
"""
Must be called before anything else in this module
"""
SurveyV2Context.struct_fixup()
if local.env.get("PLASTER_C_COMPILE"):
with local.cwd(lib_folder):
fp = StringIO()
with redirect_stdout(fp):
print(
f"// This file was code-generated by survey_v2.c.survey_v2.init and should be version controlled"
)
print()
print("#ifndef SIM_V2_H")
print("#define SIM_V2_H")
print()
print('#include "stdint.h"')
print('#include "c_common.h"')
print()
SurveyV2Context.struct_emit_header(fp)
print("#endif")
header_file_path = "./_survey_v2.h"
existing_h = utils.load(header_file_path, return_on_non_existing="")
if existing_h != fp.getvalue():
utils.save(header_file_path, fp.getvalue())
build_dev()
def _init():
"""
Must be called before anything else in this module
"""
NNV2Context.struct_fixup()
if local.env.get("PLASTER_C_COMPILE"):
with local.cwd(c_nn_v2_path):
fp = StringIO()
with redirect_stdout(fp):
print(
f"// This file was code-generated by nn_v2.c.nn_v2.load_lib and should be version controlled"
)
print()
print("#ifndef NN_V2_H")
print("#define NN_V2_H")
print()
print('#include "pthread.h"')
print('#include "stdint.h"')
print('#include "c_common.h"')
print()
NNV2ScoringVerboseFields.emit_col_name_defines(fp)
print()
NNV2Context.struct_emit_header(fp)
print("#endif")
header_file_path = "./_nn_v2.h"
existing_h = utils.load(header_file_path,
return_on_non_existing="")
if existing_h != fp.getvalue():
utils.save(header_file_path, fp.getvalue())
build_dev()
def cache_source(cache_folder, source, copy_to):
"""
If this is a URL or S3 fetch and cache at cache_folder. Local files
can be loaded from //jobs_folder/... only.
In all cases, the cached file is optionally copied to copy_to so that
that job folders contain a copy of all gen source data.
Returns:
the contents of the file
"""
def make_cache_path():
local.path(cache_folder).mkdir()
return (
local.path(cache_folder) / hashlib.md5(source.encode("utf-8")).hexdigest()
)
file_contents = None
if source.startswith("http://") or source.startswith("https://"):
cache_path = make_cache_path()
if not cache_path.exists():
important(f"Fetching {source}... (TO {cache_path})")
file_contents = _url_get(source)
utils.save(cache_path, file_contents)
else:
file_contents = utils.load(cache_path)
elif source.startswith("s3://"):
cache_path = make_cache_path()
if not cache_path.exists():
tell(f"Syncing from {source} to {cache_path}")
local["aws"]["s3", "cp", source, cache_path] & FG
# s3 cp already saves it to disk, fall thru & load
file_contents = utils.load(cache_path)
else:
file_contents = utils.load(source)
assert file_contents is not None
if copy_to:
assert local.path(copy_to).exists()
filename = local.path(source).basename
utils.save(copy_to / filename, file_contents)
return file_contents
def _init():
"""
Must be called before anything else in this module
"""
SimV2Context.struct_fixup()
# Dyt.struct_fixup()
PCB.struct_fixup()
Counts.struct_fixup()
DyePepRec.struct_fixup()
if local.env.get("PLASTER_C_COMPILE"):
with local.cwd(lib_folder):
fp = StringIO()
with redirect_stdout(fp):
print(
f"// This file was code-generated by sim_v2.c.sim_v2.init and should be version controlled"
)
print()
print("#ifndef SIM_V2_H")
print("#define SIM_V2_H")
print()
print('#include "stdint.h"')
print('#include "c_common.h"')
print()
print(
textwrap.dedent("""\
typedef struct {
Size count;
Index dyt_i;
DyeType chcy_dye_counts[];
// Note, this is a variable sized record
// See dyt_* functions for manipulating it
} Dyt; // Dye-track record
"""))
print()
SimV2Context.struct_emit_header(fp)
# Dyt.struct_emit_header(fp)
PCB.struct_emit_header(fp)
Counts.struct_emit_header(fp)
print("#endif")
header_file_path = "./_sim_v2.h"
existing_h = utils.load(header_file_path,
return_on_non_existing="")
if existing_h != fp.getvalue():
utils.save(header_file_path, fp.getvalue())
build_dev()
def html_template(title, scripts):
root = os.environ.get("ERISYON_ROOT")
assert root
zscript = load(root + "/tools/html/zscript.js")
newline = "\n"
return ((f"""
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1">
<title>{title}</title>
<link rel="icon" href="data:;base64,iVBORw0KGgo=">
<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css" integrity="sha384-ggOyR0iXCbMQv3Xipma34MD+dH/1fQ784/j6cY/iJTQUOhcWr7x9JvoRxT2MZw1T" crossorigin="anonymous">
<script src="https://code.jquery.com/jquery-3.3.1.slim.min.js" integrity="sha384-q8i/X+965DzO0rT7abK41JStQIAqVgRVzpbzo5smXKp4YfRvH+8abtTE1Pi6jizo" crossorigin="anonymous"></script>
<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.14.7/umd/popper.min.js" integrity="sha384-UO2eT0CpHqdSJQ6hJty5KVphtPhzWj9WO1clHTMGa3JDZwrnQq4sF86dIHNDz0W1" crossorigin="anonymous"></script>
<script src="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/js/bootstrap.min.js" integrity="sha384-JjSmVgyd0p3pXB1rRibZUAYoIIy6OrQ6VrjIEaFf/nJGzIxFDsf4x0xIM+B07jRM" crossorigin="anonymous"></script>
<link rel="stylesheet" href="https://cdn.datatables.net/1.10.18/css/dataTables.bootstrap4.min.css" crossorigin="anonymous">
<script src="https://cdn.datatables.net/1.10.18/js/jquery.dataTables.min.js" crossorigin="anonymous"></script>
<script src="https://cdn.datatables.net/1.10.18/js/dataTables.bootstrap4.min.js" crossorigin="anonymous"></script>
<script>
{zscript}
</script>
{
newline.join([f"<script>{newline}{script}{newline}</script>" for script in scripts])
}
""") + ("""
<script>
$(document).ready(function() {
setInterval( function interval() {
$(".timesince").each((i, item) => {
$(item).text(
timeSince($(item).data("date")) + " ago"
);
});
return interval;
}(), 1000);
});
</script>
</head>
<body id="main" class="container">
</body>
</html>
"""))
def profile_from_file(log_file):
log_str = utils.load(log_file, return_on_non_existing="")
return profile_from_string(log_str)
