Exemple #1
0
    def aggregate_and_plot(self):
        global SIC_ORIG
        global SIC_ROOT 
        global SIC_PROCESSED 
        global SIC_RESULTS 
        global SIC_DATA_PICKLE 
        mskpath = join(SIC_ROOT, SIC_PROCESSED)
        global d

        try:
            d
        except NameError:
            d = pickle.load(file(join(SIC_ROOT, SIC_PROCESSED, SIC_DATA_PICKLE)))
            
        o2n = d["o2n"]
        spots = aggregate_spots(o2n, mskpath)
        d["spots"] = spots
        pickle.dump(d, file(join(SIC_ROOT, SIC_RESULTS, SIC_DATA_PICKLE), "w"))
        histogram_intensities(spots, mskpath)
        scatterplot_intensities(spots, mskpath)
        spots_per_cell_distribution(spots, mskpath)
        pl.show()
Exemple #2
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    def aggregate_and_plot(self):
        global SIC_ORIG
        global SIC_ROOT
        global SIC_PROCESSED
        global SIC_RESULTS
        global SIC_DATA_PICKLE
        mskpath = join(SIC_ROOT, SIC_PROCESSED)
        global d

        try:
            d
        except NameError:
            d = pickle.load(
                file(join(SIC_ROOT, SIC_PROCESSED, SIC_DATA_PICKLE)))

        o2n = d["o2n"]
        spots = aggregate_spots(o2n, mskpath)
        d["spots"] = spots
        pickle.dump(d, file(join(SIC_ROOT, SIC_RESULTS, SIC_DATA_PICKLE), "w"))
        histogram_intensities(spots, mskpath)
        scatterplot_intensities(spots, mskpath)
        spots_per_cell_distribution(spots, mskpath)
        pl.show()
Exemple #3
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def make_plots(spots, d):
    pf.histogram_intensities(spots)
    pf.scatterplot_intensities(spots)
    pf.spots_per_cell_distribution(spots)
    #pf.plot_time2ratio_between_one_dot_number_and_cell_number(d)
    pl.show()
Exemple #4
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def make_plots(spots, d):
    pf.histogram_intensities(spots)
    pf.scatterplot_intensities(spots)
    pf.spots_per_cell_distribution(spots)
    #pf.plot_time2ratio_between_one_dot_number_and_cell_number(d)
    pl.show()