def main():
get_import = Query("GetPosdaFilesImportControl")
go_in_service = Query("GoInServicePosdaImport")
quit_q = Query("RelinquishControlPosdaImport")
while True:
# get current status
for import_control in get_import.run(): pass
if import_control.status == "waiting to go inservice":
go_in_service.execute(MYPID)
continue
if import_control.status == "service process running":
if import_control.processor_pid != MYPID:
printe("Some other process controlling import")
return
if import_control.pending_change_request == "shutdown":
quit_q.execute()
printe("Relinquished control of posda_import")
return
printe("Doing actual work (well, pretending)")
else:
printe(f"unknown state ({import_control.status}) for posda_import")
def main():
get_import = Query("GetPosdaFilesImportControl")
go_in_service = Query("GoInServicePosdaImport")
quit_q = Query("RelinquishControlPosdaImport")
while True:
# get current status
for import_control in get_import.run():
pass
if import_control.status == "waiting to go inservice":
go_in_service.execute(MYPID)
continue
if import_control.status == "service process running":
if import_control.processor_pid != MYPID:
printe("Some other process controlling import")
return
if import_control.pending_change_request == "shutdown":
quit_q.execute()
printe("Relinquished control of posda_import")
return
printe("Doing actual work (well, pretending)")
else:
printe(f"unknown state ({import_control.status}) for posda_import")
print("Initial line written to email")
hierarchy = None
report = background.create_report(f"DICOM Hierarchy for {series_count} series")
writer = csv.writer(report)
writer.writerow([
"collection",
"site",
"patient_id",
"study_instance_uid",
"study_date",
"study_description",
"series_instance_uid",
"series_date",
"series_description",
"modality",
"dicom_file_type",
"num_files",
])
for i, s in enumerate(series):
background.set_activity_status(f"Querying {i} of {series_count}")
for row in q.run(s):
writer.writerow(tuple(row))
print("Final line written to email")
elapsed = time.time() - start
background.finish(f"Processed {series_count} in {elapsed} seconds")
scan_id = Query("CreateSimplePhiScanRow").get_single_value(
description=args.description,
num_series=len(input_lines),
file_query=args.file_query_name
)
# create queries we are going to use multiple times
# TODO: ^ that
for series in input_lines:
printe(f"Processing {series}")
count = 0
for row in get_series_count.run(series):
count += 1
printe(f"Found {count} files in this series.")
series_scan_id = Query("CreateSimpleSeriesScanInstance").get_single_value(
scan_instance_id=scan_id,
series_instance_uid=series
)
cmd = "PhiSimpleSeriesScan.pl"
command = [cmd, series, args.file_query_name]
for line in lines(command):
tagp, vr, value = unpack_n(line.split('|'), 3)