def exec_report(self, name, data, context={}):
datas = data.copy()
ids = datas['ids']
del datas['ids']
if not ids:
ids = rpc.session.rpc_exec_auth('/object', 'execute', datas['model'], 'search', datas.get('_domain',[]))
if ids == []:
common.message(_('Nothing to print!'))
return False
datas['id'] = ids[0]
ctx = rpc.session.context.copy()
ctx.update(context)
report_id = rpc.session.rpc_exec_auth('/report', 'report', name, ids, datas, ctx)
state = False
attempt = 0
max_attemps = int(options.options.get('client.timeout') or 0)
while not state:
val = rpc.session.rpc_exec_auth('/report', 'report_get', report_id)
if not val:
return False
state = val['state']
if not state:
time.sleep(1)
attempt += 1
if attempt>max_attemps:
common.message(_('Printing aborted, too long delay !'))
return False
printer.print_data(val)
return True
def exec_report(self, name, data, context={}):
datas = data.copy()
ids = datas['ids']
del datas['ids']
if not ids:
ids = rpc.session.rpc_exec_auth('/object', 'execute',
datas['model'], 'search', [])
if ids == []:
common.message(_('Nothing to print!'))
return False
datas['id'] = ids[0]
ctx = rpc.session.context.copy()
ctx.update(context)
report_id = rpc.session.rpc_exec_auth('/report', 'report', name, ids,
datas, ctx)
state = False
attempt = 0
max_attemps = int(options.options.get('client.timeout') or 0)
while not state:
val = rpc.session.rpc_exec_auth('/report', 'report_get', report_id)
if not val:
return False
state = val['state']
if not state:
time.sleep(1)
attempt += 1
if attempt > max_attemps:
common.message(_('Printing aborted, too long delay !'))
return False
printer.print_data(val)
return True
def main():
parser = argparse.ArgumentParser(
description='Get Star Wars data from SWAPI')
parser.add_argument('--format',
choices=['json', 'text', 'list'],
default='text',
help='output format')
parser.add_argument(
'--fields',
help=
'print only specific fields (coma-separated list). eg: \'name,population,terrain\''
)
parser.add_argument(
'--filter',
nargs=3,
action='append',
help='field_name operator value. eg: \'name = Tatooine\'')
parser.add_argument('--nocache',
action='store_true',
help='disable requests cache')
parser.add_argument('resource', help='resource to get')
args = parser.parse_args()
fields = []
if args.fields is not None:
fields = list(map(str.strip, args.fields.split(sep=',')))
try:
data = swcli(args.resource,
filter_cmds=args.filter,
cache=not (args.nocache))
except Exception as err:
print("ERROR: %s" % err, file=sys.stderr)
exit(1)
if not data:
print("No results", file=sys.stderr)
exit(1)
printer.print_data(data, args.format, fields)
thorings = monomer.mark_thio(monomer1)
intermono = monomer.find_intermono(monomer1)
halfmono = monomer.get_single_alist(monomer1)
attach = monomer.find_attach(monomer1,halfmono)
test2 = monomer.attach(halfmono,attach,monomer1,length)
monomer.print_mono(test2,"outputs/test")
#monomer.create_polymer_cml(mname,halfmono,attach,monomer1)
sys.stdout = sys.__stdout__
#create babel and read to get better partials
babel.read_babel_set(mname,atoms)
atom.adjust_partials(atoms)
#write different dft finders
#write_nwchem.dft(dihedrals)
#write_qchem.write(atoms,dihedrals)
sys.stdout = sys.__stdout__
if debug:
printer.debug(atoms,bonds,angles,dihedrals,rings,fused_rings,opls_atoms,opls_bonds,opls_angles,opls_dihedrals)
#print all the output files
printer.print_data(dname,atoms,bonds,angles,dihedrals,unique_a,unique_b,unique_ang,unique_d,xmin,xmax,ymin,ymax,zmin,zmax)
if help == False or isfile == False:
printer.print_lammpsin(inname,dataname,lammpsinput)
sys.stdout = sys.__stdout__
printer.print_srun(lammpsinput)
#autorun
#os.system('sbatch run_%s' % lammpsinput)
