def test_load_cascades():
from simulation import Simulation
from project_manager import ProjectManager
from test_simulation_module import get_test_workflow
sims = get_test_workflow(1)
pm = ProjectManager()
pm.add_simulations(sims.list())
idc = id(pm.cascades)
idp = id(pm.progressing_cascades)
pm.load_cascades()
assert (list(pm.cascades.keys()) == [sims.s1.simid])
assert (list(pm.progressing_cascades.keys()) == [sims.s1.simid])
assert (id(pm.cascades[sims.s1.simid]) == id(sims.s1))
assert (id(pm.progressing_cascades[sims.s1.simid]) == id(sims.s1))
assert (id(pm.cascades) != idc)
assert (id(pm.progressing_cascades) != idp)
Simulation.clear_all_sims()
def test_screen_fake_sims():
from generic import NexusError
from simulation import Simulation
from project_manager import ProjectManager
from test_simulation_module import get_test_workflow, n_test_workflows
sims = []
for n in range(n_test_workflows):
sims.extend(get_test_workflow(n).list())
#end for
pm = ProjectManager()
pm.add_simulations(sims)
pm.screen_fake_sims()
s = sims[len(sims) // 2]
s.fake_sim = True
try:
pm.screen_fake_sims()
raise FailedTest
except NexusError:
None
except FailedTest:
failed()
except Exception as e:
failed(str(e))
#end try
Simulation.clear_all_sims()
def run_project(*args,**kwargs):
if nexus_core.graph_sims:
graph_sims()
#end if
pm = ProjectManager()
pm.add_simulations(*args,**kwargs)
pm.run_project()
return pm
def test_propagate_blockages():
from generic import NexusError
from simulation import Simulation
from project_manager import ProjectManager
from test_simulation_module import get_test_workflow, n_test_workflows
sims = []
for n in range(n_test_workflows):
sims.extend(get_test_workflow(n).list())
#end for
for s in sims:
assert (not s.block)
assert (not s.block_subcascade)
#end for
pm = ProjectManager()
pm.add_simulations(sims)
pm.propagate_blockages()
nb = 5
dn = len(sims) // nb
for b in range(nb):
s = sims[nb * b]
s.block = True
#end for
pm.propagate_blockages()
def assert_blocked(sim):
assert (sim.block)
assert (sim.block_subcascade)
#end def assert_blocked
for b in range(nb):
s = sims[nb * b]
s.traverse_full_cascade(assert_blocked)
#end for
Simulation.clear_all_sims()
def test_check_dependencies():
from simulation import Simulation
from project_manager import ProjectManager
from test_simulation_module import get_test_workflow
divert_nexus_log()
sims = get_test_workflow(1)
pm = ProjectManager()
pm.add_simulations(sims.list())
idc = id(pm.cascades)
idp = id(pm.progressing_cascades)
pm.check_dependencies()
restore_nexus_log()
Simulation.clear_all_sims()
def test_resolve_file_collisions():
from generic import NexusError
from simulation import Simulation
from project_manager import ProjectManager
from test_simulation_module import get_test_workflow, n_test_workflows
divert_nexus_log()
sims = []
for n in range(n_test_workflows):
sims.extend(get_test_workflow(n).list())
#end for
pm = ProjectManager()
pm.add_simulations(sims)
pm.resolve_file_collisions()
s1 = sims[len(sims) // 2]
s2 = sims[len(sims) // 2 + 1]
s2.locdir = s1.locdir
s2.outfile = s1.outfile
try:
pm.resolve_file_collisions()
raise FailedTest
except NexusError:
None
except FailedTest:
failed()
except Exception as e:
failed(str(e))
#end try
restore_nexus_log()
Simulation.clear_all_sims()
def test_traverse_cascades():
from simulation import Simulation
from project_manager import ProjectManager
from test_simulation_module import get_test_workflow, n_test_workflows
sims = []
for n in range(n_test_workflows):
sims.extend(get_test_workflow(n).list())
#end for
pm = ProjectManager()
pm.add_simulations(sims)
pm.traverse_cascades()
def count_visits(sim, visit_counts):
i = sim.simid
if i not in visit_counts:
visit_counts[i] = 1
else:
visit_counts[i] += 1
#end if
#end def count_visits
counts = dict()
pm.traverse_cascades(count_visits, counts)
assert (len(counts) == len(sims))
for s in sims:
assert (s.simid in counts)
assert (counts[s.simid] == 1)
#end for
Simulation.clear_all_sims()
def test_add_simulations():
from simulation import Simulation
from project_manager import ProjectManager
from test_simulation_module import get_test_workflow
sims = get_test_workflow(1)
pm = ProjectManager()
pm.add_simulations(sims.list())
assert (list(pm.cascades.keys()) == [sims.s1.simid])
assert (list(pm.progressing_cascades.keys()) == [sims.s1.simid])
assert (id(pm.cascades[sims.s1.simid]) == id(sims.s1))
assert (id(pm.progressing_cascades[sims.s1.simid]) == id(sims.s1))
assert (len(pm.simulations) == 3)
n = 0
for s in sims:
assert (s.simid in pm.simulations)
assert (id(pm.simulations[s.simid]) == id(s))
n += 1
#end for
assert (n == 3)
pm = ProjectManager()
pm.add_simulations()
assert (len(pm.simulations) == len(Simulation.all_sims))
n = 0
for s in Simulation.all_sims:
assert (s.simid in pm.simulations)
assert (id(pm.simulations[s.simid]) == id(s))
n += 1
#end for
assert (n >= 3)
Simulation.clear_all_sims()
def run_project(*args,**kwargs):
pm = ProjectManager()
pm.add_simulations(*args,**kwargs)
pm.run_project()
def run_project(*args, **kwargs):
pm = ProjectManager()
pm.add_simulations(*args, **kwargs)
pm.run_project()
def test_run_project():
from generic import generic_settings
from nexus_base import nexus_core
from simulation import Simulation, input_template
from project_manager import ProjectManager
from test_simulation_module import get_test_workflow, n_test_workflows
tpath = testing.setup_unit_test_output_directory('project_manager',
'test_run_project',
divert=True)
assert (nexus_core.mode == nexus_core.modes.stages)
assert (len(nexus_core.stages) == 0)
nexus_core.stages = list(nexus_core.primary_modes)
nexus_core.stages_set = set(nexus_core.stages)
primary_modes = ['setup', 'send_files', 'submit', 'get_output', 'analyze']
assert (value_eq(nexus_core.stages, primary_modes))
assert (value_eq(nexus_core.stages_set, set(primary_modes)))
nexus_core.sleep = 0.1
log = generic_settings.devlog
flags = [
'setup', 'sent_files', 'submitted', 'finished', 'got_output',
'analyzed'
]
def finished(s):
f = True
for flag in flags:
f &= s[flag]
#end for
f &= isinstance(s.process_id, int)
return f
#end def finished
def empty(s):
e = True
for flag in flags:
e &= not s[flag]
#end for
e &= s.process_id is None
e &= s.job.system_id is None
return e
#end def empty
sims = []
for n in range(n_test_workflows):
#for n in range(1):
sims.extend(get_test_workflow(n).list())
#end for
template = '''
name = "$name"
a = $a
'''
for s in sims:
si = input_template(text=template)
si.assign(name='input_name', a=1)
s.input = si
#end for
for s in sims:
assert (empty(s))
#end for
pm = ProjectManager()
pm.machine = sims[0].job.get_machine()
pm.add_simulations(sims)
#pm.write_simulation_status()
pm.run_project()
#pm.write_simulation_status()
#print(log.contents())
for s in sims:
assert (finished(s))
#end for
restore_nexus()
Simulation.clear_all_sims()
def test_write_simulation_status():
from generic import generic_settings
from nexus_base import nexus_core
from simulation import Simulation
from project_manager import ProjectManager
from test_simulation_module import get_test_workflow
divert_nexus()
log = generic_settings.devlog
sims = get_test_workflow(3)
for id, sim in sims.items():
sim.identifier = 'test_sim_' + id
#end for
pm = ProjectManager()
pm.add_simulations(sims.list())
status_modes = nexus_core.status_modes
def status_log():
log.reset()
pm.write_simulation_status()
s = log.contents()
return s
#end def status_log
assert (nexus_core.status == status_modes.none)
status_ref = '''
cascade status
setup, sent_files, submitted, finished, got_output, analyzed, failed
000000 0 ------ test_sim_s11 ./runs/
000000 0 ------ test_sim_s21 ./runs/
000000 0 ------ test_sim_s12 ./runs/
000000 0 ------ test_sim_s22 ./runs/
000000 0 ------ test_sim_s3 ./runs/
000000 0 ------ test_sim_s4 ./runs/
000000 0 ------ test_sim_s5 ./runs/
setup, sent_files, submitted, finished, got_output, analyzed, failed
'''
assert (status_log().strip() == status_ref.strip())
nexus_core.status = status_modes.standard
assert (status_log().strip() == status_ref.strip())
nexus_core.status = status_modes.active
status_ref = '''
cascade status
setup, sent_files, submitted, finished, got_output, analyzed, failed
000000 0 ------ test_sim_s11 ./runs/
000000 0 ------ test_sim_s12 ./runs/
setup, sent_files, submitted, finished, got_output, analyzed, failed
'''
assert (status_log().strip() == status_ref.strip())
nexus_core.status = status_modes.ready
assert (status_log().strip() == status_ref.strip())
nexus_core.status = status_modes.failed
status_ref = '''
cascade status
setup, sent_files, submitted, finished, got_output, analyzed, failed
setup, sent_files, submitted, finished, got_output, analyzed, failed
'''
assert (status_log().strip() == status_ref.strip())
restore_nexus()
Simulation.clear_all_sims()
