def cml_export_struc(stack, outdir, irun, Ori):
from projection import plot_angles
from utilities import set_params_proj, get_im
global g_n_prj
pagls = []
for i in xrange(g_n_prj):
data = get_im(stack, i)
p = [Ori[4 * i], Ori[4 * i + 1], Ori[4 * i + 2], 0.0, 0.0]
set_params_proj(data, p)
data.write_image(outdir + '/structure_%03i.hdf' % irun, i)
# prepare angles to plot
pagls.append([Ori[4 * i], Ori[4 * i + 1], Ori[4 * i + 2]])
# plot angles
im = plot_angles(pagls)
im.write_image(outdir + '/plot_agls_%03i.hdf' % irun)
def cml_export_struc(stack, outdir, irun, Ori): from projection import plot_angles from utilities import set_params_proj, get_im global g_n_prj pagls = [] for i in xrange(g_n_prj): data = get_im(stack, i) p = [Ori[4*i], Ori[4*i+1], Ori[4*i+2], 0.0, 0.0] set_params_proj(data, p) data.write_image(outdir + '/structure_%03i.hdf' % irun, i) # prepare angles to plot pagls.append([Ori[4*i], Ori[4*i+1], Ori[4*i+2]]) # plot angles im = plot_angles(pagls) im.write_image(outdir + '/plot_agls_%03i.hdf' % irun)