def test_parse_medium(self):
medium = list(
native.parse_medium(
{
'compartment':
'e',
'compounds': [{
'id': 'ac'
}, {
'id': 'glcD',
'lower': -10
}, {
'id': 'co2',
'upper': 50
}, {
'id': 'compound_x',
'compartment': 'c'
}, {
'id': 'compound_y',
'reaction': 'EX_cpdy'
}]
}, 'e'))
self.assertEqual(len(medium), 5)
self.assertEqual(medium[0], (Compound('ac', 'e'), None, None, None))
self.assertEqual(medium[1], (Compound('glcD', 'e'), None, -10, None))
self.assertEqual(medium[2], (Compound('co2', 'e'), None, None, 50))
self.assertEqual(medium[3],
(Compound('compound_x', 'c'), None, None, None))
self.assertEqual(medium[4],
(Compound('compound_y', 'e'), 'EX_cpdy', None, None))
def test_parse_medium(self):
medium = list(native.parse_medium({
'compartment': 'e',
'compounds': [
{'id': 'ac'},
{'id': 'glcD', 'lower': -10},
{'id': 'co2', 'upper': 50},
{'id': 'compound_x', 'compartment': 'c'},
{'id': 'compound_y', 'reaction': 'EX_cpdy'}
]
}))
self.assertEqual(len(medium), 5)
self.assertEqual(medium[0], (Compound('ac', 'e'), None, None, None))
self.assertEqual(medium[1], (Compound('glcD', 'e'), None, -10, None))
self.assertEqual(medium[2], (Compound('co2', 'e'), None, None, 50))
self.assertEqual(
medium[3], (Compound('compound_x', 'c'), None, None, None))
self.assertEqual(
medium[4], (Compound('compound_y', 'e'), 'EX_cpdy', None, None))