def test_create_and_convert_model(self):
reader = sbml.SBMLReader(self.doc)
model = reader.create_model()
sbml.convert_sbml_model(model)
self.assertEqual({entry.id
for entry in model.compounds},
{'Glucose', 'Glucose_6_P', 'H2O', 'Phosphate'})
self.assertEqual({entry.id
for entry in model.reactions}, {'G6Pase', 'Biomass'})
self.assertEqual({entry.id for entry in model.compartments}, {'cell'})
self.assertEqual(set(model.model), {'Biomass', 'G6Pase'})
def test_create_and_convert_model(self):
reader = sbml.SBMLReader(self.doc)
model = reader.create_model()
sbml.convert_sbml_model(model)
self.assertEqual(
{entry.id
for entry in model.compounds},
{'Glucose(c)', 'Glucose_6-P(c)', 'H2O(c)', 'Phosphate(c)'})
self.assertEqual({entry.id
for entry in model.reactions}, {'G6Pase', 'Biomass'})
self.assertEqual({entry.id for entry in model.compartments}, {'c'})
self.assertEqual(model.limits['Biomass'], ('Biomass', 0, 1000))
self.assertEqual(model.biomass_reaction, 'Biomass')
self.assertEqual(set(model.model), {'Biomass', 'G6Pase'})
def test_create_and_convert_model(self):
reader = sbml.SBMLReader(self.doc)
model = reader.create_model()
sbml.convert_sbml_model(model)
self.assertEqual(
{entry.id for entry in model.compounds},
{'Glucose(c)', 'Glucose_6-P(c)', 'H2O(c)', 'Phosphate(c)'})
self.assertEqual(
{entry.id for entry in model.reactions},
{'G6Pase', 'Biomass'})
self.assertEqual(
{entry.id for entry in model.compartments},
{'c'})
self.assertEqual(set(model.model), {'Biomass', 'G6Pase'})