p.model.illumination.phase_noise_mfs = 2.0 # (40) phase noise minimum feature size on incoming wave before aperture
p.model.illumination.aperture_type = "circ" # (41) type of aperture: use
p.model.illumination.aperture_size = 1.0e-3 # (42) aperture diameter (meter)
p.model.illumination.aperture_edge = 2 # (43) edge width of aperture (pixel)
p.model.illumination.focal_dist = 0.08 # (44) distance from aperture to focus (meter)
p.model.illumination.prop_dist = 10e-3 # (45) focus: propagation distance (meter) from focus. parallel: propagation distance (meter) from aperture
p.model.illumination.UseConjugate = False # (46) use the conjugate of the probe instef of the probe
p.model.illumination.antialiasing = 2.0 # (47) antialiasing factor used when generating the probe
p.model.illumination.spot_size = None # (48) focal spot diameter (meter)
p.model.illumination.photons = 1e7 # (49) number of photons in illumination
p.model.illumination.probe = None # (50) override if not None
p.model.sample = u.Param()
p.model.sample.source = HSV_to_P1A(
RGB_to_HSV(
u.imload('../resources/ptypy_logo_1M.png')
[:, :, :-1])) # (52) 'diffraction', None, path to a file or nd-array
p.model.sample.offset = (
0, 0) # (53) offset between center of object array and scan pattern
p.model.sample.zoom = 0.5 # (54) None, scalar or 2-tupel
p.model.sample.formula = None # (55) chemical formula (string)
p.model.sample.density = 19.3 # (56) density in [g/ccm]
p.model.sample.thickness = 2000e-9 # (57) max thickness of sample
p.model.sample.ref_index = None #0.5+0.3j # (58) assigned refractive index
p.model.sample.smoothing_mfs = 2.0 # (59) smooth the projection with gaussian kernel of with x pixels
p.model.sample.noise_rms = None # (60) noise applied, relative to 2*pi in phase and relative to 1 in amplitude
p.model.sample.noise_mfs = 10 # (61) see noise rms.
p.model.sample.fill = 1.0 + 0.j # (62) if object is smaller than the objectframe, fill with fill
p.model.sample.obj = None # (63) override
p.model.coherence = u.Param()
p.model.coherence.Nprobe_modes = 1 # (65)
p.model.illumination.incoming = None # (38) `None`, path to a file or any python evaluable statement yielding a 2d numpy array. If `None` defaults to array of ones
p.model.illumination.phase_noise_rms = None # (39) phase noise amplitude on incoming wave before aperture
p.model.illumination.phase_noise_mfs = 2.0 # (40) phase noise minimum feature size on incoming wave before aperture
p.model.illumination.aperture_type = "circ" # (41) type of aperture: use
p.model.illumination.aperture_size = 1.0e-3 # (42) aperture diameter (meter)
p.model.illumination.aperture_edge = 2 # (43) edge width of aperture (pixel)
p.model.illumination.focal_dist = 0.08 # (44) distance from aperture to focus (meter)
p.model.illumination.prop_dist = 10e-3 # (45) focus: propagation distance (meter) from focus. parallel: propagation distance (meter) from aperture
p.model.illumination.UseConjugate = False # (46) use the conjugate of the probe instef of the probe
p.model.illumination.antialiasing = 2.0 # (47) antialiasing factor used when generating the probe
p.model.illumination.spot_size = None # (48) focal spot diameter (meter)
p.model.illumination.photons = 1e7 # (49) number of photons in illumination
p.model.illumination.probe = None # (50) override if not None
p.model.sample = u.Param()
p.model.sample.source = HSV_to_P1A(RGB_to_HSV(u.imload('../resources/ptypy_logo_1M.png')[:,:,:-1]))# (52) 'diffraction', None, path to a file or nd-array
p.model.sample.offset = (0,0) # (53) offset between center of object array and scan pattern
p.model.sample.zoom = 0.5 # (54) None, scalar or 2-tupel
p.model.sample.formula = None # (55) chemical formula (string)
p.model.sample.density = 19.3 # (56) density in [g/ccm]
p.model.sample.thickness = 2000e-9 # (57) max thickness of sample
p.model.sample.ref_index = None#0.5+0.3j # (58) assigned refractive index
p.model.sample.smoothing_mfs = 2.0 # (59) smooth the projection with gaussian kernel of with x pixels
p.model.sample.noise_rms = None # (60) noise applied, relative to 2*pi in phase and relative to 1 in amplitude
p.model.sample.noise_mfs = 10 # (61) see noise rms.
p.model.sample.fill = 1.0+0.j # (62) if object is smaller than the objectframe, fill with fill
p.model.sample.obj = None # (63) override
p.model.coherence = u.Param()
p.model.coherence.Nprobe_modes = 1 # (65)
p.model.coherence.Nobject_modes = 1 # (66)
p.model.illumination.incoming = None # (38) `None`, path to a file or any python evaluable statement yielding a 2d numpy array. If `None` defaults to array of ones
p.model.illumination.phase_noise_rms = None # (39) phase noise amplitude on incoming wave before aperture
p.model.illumination.phase_noise_mfs = 2.0 # (40) phase noise minimum feature size on incoming wave before aperture
p.model.illumination.aperture_type = "circ" # (41) type of aperture: use
p.model.illumination.aperture_size = 2.5e-6 # (42) aperture diameter (meter)
p.model.illumination.aperture_edge = 1 # (43) edge width of aperture (pixel)
p.model.illumination.focal_dist = 0.08 # (44) distance from aperture to focus (meter)
p.model.illumination.prop_dist = 4e-3 # (45) focus: propagation distance (meter) from focus. parallel: propagation distance (meter) from aperture
p.model.illumination.UseConjugate = False # (46) use the conjugate of the probe instef of the probe
p.model.illumination.antialiasing = 2.0 # (47) antialiasing factor used when generating the probe
p.model.illumination.spot_size = None # (48) focal spot diameter (meter)
p.model.illumination.photons = 1e7 # (49) number of photons in illumination
p.model.illumination.probe = None # (50) override if not None
p.model.sample = u.Param()
p.model.sample.source = 255-u.imload('../resources/tree.bmp').astype(float).mean(-1)# (52) 'diffraction', None, path to a file or nd-array
p.model.sample.offset = (100,400) # (53) offset between center of object array and scan pattern
p.model.sample.zoom = 1.0 # (54) None, scalar or 2-tupel
p.model.sample.formula = "Ca" # (55) chemical formula (string)
p.model.sample.density = 1.5 # (56) density in [g/ccm]
p.model.sample.thickness = 20e-6 # (57) max thickness of sample
p.model.sample.ref_index = None # (58) assigned refractive index
p.model.sample.smoothing_mfs = None # (59) smooth the projection with gaussian kernel of with x pixels
p.model.sample.noise_rms = None # (60) noise applied, relative to 2*pi in phase and relative to 1 in amplitude
p.model.sample.noise_mfs = 10 # (61) see noise rms.
p.model.sample.fill = 1.0+0.j # (62) if object is smaller than the objectframe, fill with fill
p.model.sample.obj = None # (63) override
p.model.coherence = u.Param()
p.model.coherence.Nprobe_modes = 1 # (65)
p.model.coherence.Nobject_modes = 1 # (66)
p.model.illumination.incoming = None # (38) `None`, path to a file or any python evaluable statement yielding a 2d numpy array. If `None` defaults to array of ones
p.model.illumination.phase_noise_rms = None # (39) phase noise amplitude on incoming wave before aperture
p.model.illumination.phase_noise_mfs = 2.0 # (40) phase noise minimum feature size on incoming wave before aperture
p.model.illumination.aperture_type = "circ" # (41) type of aperture: use
p.model.illumination.aperture_size = 2.5e-6 # (42) aperture diameter (meter)
p.model.illumination.aperture_edge = 1 # (43) edge width of aperture (pixel)
p.model.illumination.focal_dist = 0.08 # (44) distance from aperture to focus (meter)
p.model.illumination.prop_dist = 4e-3 # (45) focus: propagation distance (meter) from focus. parallel: propagation distance (meter) from aperture
p.model.illumination.UseConjugate = False # (46) use the conjugate of the probe instef of the probe
p.model.illumination.antialiasing = 2.0 # (47) antialiasing factor used when generating the probe
p.model.illumination.spot_size = None # (48) focal spot diameter (meter)
p.model.illumination.photons = 1e7 # (49) number of photons in illumination
p.model.illumination.probe = None # (50) override if not None
p.model.sample = u.Param()
p.model.sample.source = 255 - u.imload('../resources/tree.bmp').astype(
float).mean(-1) # (52) 'diffraction', None, path to a file or nd-array
p.model.sample.offset = (
100, 400) # (53) offset between center of object array and scan pattern
p.model.sample.zoom = 1.0 # (54) None, scalar or 2-tupel
p.model.sample.formula = "Ca" # (55) chemical formula (string)
p.model.sample.density = 1.5 # (56) density in [g/ccm]
p.model.sample.thickness = 20e-6 # (57) max thickness of sample
p.model.sample.ref_index = None # (58) assigned refractive index
p.model.sample.smoothing_mfs = None # (59) smooth the projection with gaussian kernel of with x pixels
p.model.sample.noise_rms = None # (60) noise applied, relative to 2*pi in phase and relative to 1 in amplitude
p.model.sample.noise_mfs = 10 # (61) see noise rms.
p.model.sample.fill = 1.0 + 0.j # (62) if object is smaller than the objectframe, fill with fill
p.model.sample.obj = None # (63) override
p.model.coherence = u.Param()
p.model.coherence.Nprobe_modes = 1 # (65)
