Exemple #1
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def test_can_create_node_with_properties(graph):
    node = Node(name="Alice")
    statement = CreateStatement(graph)
    statement.create(node)
    created = statement.execute()
    assert created == (node, )
    assert node.bound
def test_can_create_naked_node(graph):
    node = Node()
    statement = CreateStatement(graph)
    statement.create(node)
    created = statement.execute()
    assert created == (node,)
    assert node.bound
def test_can_create_node_with_properties(graph):
    node = Node(name="Alice")
    statement = CreateStatement(graph)
    statement.create(node)
    created = statement.execute()
    assert created == (node,)
    assert node.bound
Exemple #4
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def test_can_create_naked_node(graph):
    node = Node()
    statement = CreateStatement(graph)
    statement.create(node)
    created = statement.execute()
    assert created == (node, )
    assert node.bound
def test_cannot_create_uncastable_type(graph):
    statement = CreateStatement(graph)
    try:
        statement.create("this is not a valid thing to create")
    except TypeError:
        assert True
    else:
        assert False
Exemple #6
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def test_cannot_create_none(graph):
    statement = CreateStatement(graph)
    try:
        statement.create(None)
    except TypeError:
        assert True
    else:
        assert False
Exemple #7
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def test_cannot_create_uncastable_type(graph):
    statement = CreateStatement(graph)
    try:
        statement.create("this is not a valid thing to create")
    except TypeError:
        assert True
    else:
        assert False
def test_cannot_create_none(graph):
    statement = CreateStatement(graph)
    try:
        statement.create(None)
    except TypeError:
        assert True
    else:
        assert False
Exemple #9
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def test_can_create_node_with_label(graph):
    if not graph.supports_node_labels:
        return
    node = Node("Person", name="Alice")
    statement = CreateStatement(graph)
    statement.create(node)
    created = statement.execute()
    assert created == (node, )
    assert node.bound
def test_can_create_node_with_label(graph):
    if not graph.supports_node_labels:
        return
    node = Node("Person", name="Alice")
    statement = CreateStatement(graph)
    statement.create(node)
    created = statement.execute()
    assert created == (node,)
    assert node.bound
Exemple #11
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def test_cannot_use_a_pointer_that_is_out_of_range(graph):
    broken_relationship = Relationship(10, "KNOWS", 11)
    statement = CreateStatement(graph)
    try:
        statement.create(broken_relationship)
    except IndexError:
        assert True
    else:
        assert False
def test_cannot_use_a_pointer_that_is_out_of_range(graph):
    broken_relationship = Relationship(10, "KNOWS", 11)
    statement = CreateStatement(graph)
    try:
        statement.create(broken_relationship)
    except IndexError:
        assert True
    else:
        assert False
def test_can_create_a_relationship_to_two_existing_nodes(graph):
    alice = graph.cypher.execute_one("CREATE (a {name:'Alice'}) RETURN a")
    bob = graph.cypher.execute_one("CREATE (b {name:'Bob'}) RETURN b")
    alice_knows_bob = Relationship(alice, "KNOWS", bob)
    statement = CreateStatement(graph)
    statement.create(alice_knows_bob)
    created = statement.execute()
    assert created == (alice_knows_bob,)
    assert alice_knows_bob.bound
    assert alice_knows_bob.start_node is alice
    assert alice_knows_bob.end_node is bob
Exemple #14
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def test_can_create_a_relationship_to_two_existing_nodes(graph):
    alice = graph.cypher.execute_one("CREATE (a {name:'Alice'}) RETURN a")
    bob = graph.cypher.execute_one("CREATE (b {name:'Bob'}) RETURN b")
    alice_knows_bob = Relationship(alice, "KNOWS", bob)
    statement = CreateStatement(graph)
    statement.create(alice_knows_bob)
    created = statement.execute()
    assert created == (alice_knows_bob, )
    assert alice_knows_bob.bound
    assert alice_knows_bob.start_node is alice
    assert alice_knows_bob.end_node is bob
def test_can_create_two_nodes_and_a_unique_relationship(graph):
    alice = Node(name="Alice")
    bob = Node(name="Bob")
    alice_knows_bob = Relationship(alice, "KNOWS", bob)
    statement = CreateStatement(graph)
    statement.create(alice)
    statement.create(bob)
    statement.create_unique(alice_knows_bob)
    created = statement.execute()
    assert created == (alice, bob, alice_knows_bob)
    assert alice.bound
    assert bob.bound
    assert alice_knows_bob.bound
    assert alice_knows_bob.start_node is alice
    assert alice_knows_bob.end_node is bob
Exemple #16
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def test_can_create_two_nodes_and_a_unique_relationship(graph):
    alice = Node(name="Alice")
    bob = Node(name="Bob")
    alice_knows_bob = Relationship(alice, "KNOWS", bob)
    statement = CreateStatement(graph)
    statement.create(alice)
    statement.create(bob)
    statement.create_unique(alice_knows_bob)
    created = statement.execute()
    assert created == (alice, bob, alice_knows_bob)
    assert alice.bound
    assert bob.bound
    assert alice_knows_bob.bound
    assert alice_knows_bob.start_node is alice
    assert alice_knows_bob.end_node is bob
def test_can_create_a_path_with_existing_nodes(graph):
    alice = graph.cypher.execute_one("CREATE (a {name:'Alice'}) RETURN a")
    bob = Node(name="Bob")
    carol = graph.cypher.execute_one("CREATE (c {name:'Carol'}) RETURN c")
    dave = Node(name="Dave")
    path = Path(alice, "LOVES", bob, Rev("HATES"), carol, "KNOWS", dave)
    statement = CreateStatement(graph)
    statement.create(path)
    created = statement.execute()
    assert created == (path,)
    assert bob.bound
    assert dave.bound
    ab, cb, cd = path.relationships
    assert ab.start_node is alice
    assert ab.end_node is bob
    assert cb.start_node is carol
    assert cb.end_node is bob
    assert cd.start_node is carol
    assert cd.end_node is dave
Exemple #18
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def test_can_create_a_path_with_existing_nodes(graph):
    alice = graph.cypher.execute_one("CREATE (a {name:'Alice'}) RETURN a")
    bob = Node(name="Bob")
    carol = graph.cypher.execute_one("CREATE (c {name:'Carol'}) RETURN c")
    dave = Node(name="Dave")
    path = Path(alice, "LOVES", bob, Rev("HATES"), carol, "KNOWS", dave)
    statement = CreateStatement(graph)
    statement.create(path)
    created = statement.execute()
    assert created == (path, )
    assert bob.bound
    assert dave.bound
    ab, cb, cd = path.relationships
    assert ab.start_node is alice
    assert ab.end_node is bob
    assert cb.start_node is carol
    assert cb.end_node is bob
    assert cd.start_node is carol
    assert cd.end_node is dave
def test_can_create_an_entirely_new_path(graph):
    alice = Node(name="Alice")
    bob = Node(name="Bob")
    carol = Node(name="Carol")
    dave = Node(name="Dave")
    path = Path(alice, "LOVES", bob, Rev("HATES"), carol, "KNOWS", dave)
    statement = CreateStatement(graph)
    statement.create(path)
    created = statement.execute()
    assert created == (path,)
    assert alice.bound
    assert bob.bound
    assert carol.bound
    assert dave.bound
    ab, cb, cd = path.relationships
    assert ab.start_node is alice
    assert ab.end_node is bob
    assert cb.start_node is carol
    assert cb.end_node is bob
    assert cd.start_node is carol
    assert cd.end_node is dave
Exemple #20
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def test_can_create_an_entirely_new_path(graph):
    alice = Node(name="Alice")
    bob = Node(name="Bob")
    carol = Node(name="Carol")
    dave = Node(name="Dave")
    path = Path(alice, "LOVES", bob, Rev("HATES"), carol, "KNOWS", dave)
    statement = CreateStatement(graph)
    statement.create(path)
    created = statement.execute()
    assert created == (path, )
    assert alice.bound
    assert bob.bound
    assert carol.bound
    assert dave.bound
    ab, cb, cd = path.relationships
    assert ab.start_node is alice
    assert ab.end_node is bob
    assert cb.start_node is carol
    assert cb.end_node is bob
    assert cd.start_node is carol
    assert cd.end_node is dave
Exemple #21
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def test_cannot_use_a_pointer_that_does_not_refer_to_a_node(graph):
    alice = Node(name="Alice")
    bob = Node(name="Bob")
    alice_knows_bob = Relationship(0, "KNOWS", 1)
    broken_relationship = Relationship(0, "KNOWS", 2)
    statement = CreateStatement(graph)
    statement.create(alice)
    statement.create(bob)
    statement.create(alice_knows_bob)
    try:
        statement.create(broken_relationship)
    except ValueError:
        assert True
    else:
        assert False
def test_cannot_use_a_pointer_that_does_not_refer_to_a_node(graph):
    alice = Node(name="Alice")
    bob = Node(name="Bob")
    alice_knows_bob = Relationship(0, "KNOWS", 1)
    broken_relationship = Relationship(0, "KNOWS", 2)
    statement = CreateStatement(graph)
    statement.create(alice)
    statement.create(bob)
    statement.create(alice_knows_bob)
    try:
        statement.create(broken_relationship)
    except ValueError:
        assert True
    else:
        assert False
Exemple #23
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def test_can_pass_entities_that_already_exist(graph):
    results = graph.cypher.stream("CREATE (a)-[ab:KNOWS]->(b) RETURN a, ab, b")
    alice, alice_knows_bob, bob = next(results).values
    statement = CreateStatement(graph)
    statement.create(alice)
    statement.create(bob)
    statement.create(alice_knows_bob)
    created = statement.execute()
    assert created == (alice, bob, alice_knows_bob)
def test_can_pass_entities_that_already_exist(graph):
    results = graph.cypher.stream("CREATE (a)-[ab:KNOWS]->(b) RETURN a, ab, b")
    alice, alice_knows_bob, bob = next(results).values
    statement = CreateStatement(graph)
    statement.create(alice)
    statement.create(bob)
    statement.create(alice_knows_bob)
    created = statement.execute()
    assert created == (alice, bob, alice_knows_bob)
# Relationship(nodes["b"], "RELATIONSHIP", nodes["c"]),
# Relationship(nodes["b"], "RELATIONSHIP", nodes["d"]),
# Relationship(nodes["b"], "RELATIONSHIP", nodes["e"]),
# Relationship(nodes["c"], "RELATIONSHIP", nodes["e"]),
# Relationship(nodes["d"], "RELATIONSHIP", nodes["c"]),
# Relationship(nodes["d"], "RELATIONSHIP", nodes["f"]),
# Relationship(nodes["e"], "RELATIONSHIP", nodes["g"]),
#      Relationship(nodes["e"], "RELATIONSHIP", nodes["f"]),
#      Relationship(nodes["f"], "RELATIONSHIP", nodes["g"]),
#      Relationship(nodes["g"], "RELATIONSHIP", nodes["a"])]

builder = CreateStatement(graph)

# graph.create(nodeDict.values())
for node in nodes.values():
    builder.create(node)
for edge in edges:
    builder.create(edge)
builder.execute()


def edge_query(source, target):
    return (
        "MATCH (source:NETWORK_NODE {id: '" + source + "'}) "
        "MATCH (target:NETWORK_NODE {id: '" + target + "'}) "
        "MERGE (source)-[rel:EDGE]->(target) "
        'ON CREATE SET rel._isSetEdge=true, rel.pathways=["hsa02"], rel.try=true '
        'ON MATCH SET rel._isSetEdge=true, rel.pathways= CASE WHEN NOT (HAS (rel.pathways)) THEN ["hsa02"] ELSE rel.pathways + ["hsa02", "hsa03"] END, rel.try=true '
    )

Exemple #26
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# Relationship(nodes["b"], "RELATIONSHIP", nodes["c"]),
# Relationship(nodes["b"], "RELATIONSHIP", nodes["d"]),
# Relationship(nodes["b"], "RELATIONSHIP", nodes["e"]),
# Relationship(nodes["c"], "RELATIONSHIP", nodes["e"]),
# Relationship(nodes["d"], "RELATIONSHIP", nodes["c"]),
# Relationship(nodes["d"], "RELATIONSHIP", nodes["f"]),
# Relationship(nodes["e"], "RELATIONSHIP", nodes["g"]),
#      Relationship(nodes["e"], "RELATIONSHIP", nodes["f"]),
#      Relationship(nodes["f"], "RELATIONSHIP", nodes["g"]),
#      Relationship(nodes["g"], "RELATIONSHIP", nodes["a"])]

builder = CreateStatement(graph)

# graph.create(nodeDict.values())
for node in nodes.values():
    builder.create(node)
for edge in edges:
    builder.create(edge)
builder.execute()


def edge_query(source, target):
    return (
        "MATCH (source:NETWORK_NODE {id: '" + source + "'}) "
        "MATCH (target:NETWORK_NODE {id: '" + target + "'}) "
        "MERGE (source)-[rel:EDGE]->(target) "
        "ON CREATE SET rel._isSetEdge=true, rel.pathways=[\"hsa02\"], rel.try=true "
        "ON MATCH SET rel._isSetEdge=true, rel.pathways= CASE WHEN NOT (HAS (rel.pathways)) THEN [\"hsa02\"] ELSE rel.pathways + [\"hsa02\", \"hsa03\"] END, rel.try=true "
    )

Exemple #27
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def test_statement_representation_returns_cypher(graph):
    node = Node()
    statement = CreateStatement(graph)
    statement.create(node)
    rep = repr(statement)
    assert rep == 'CREATE (_0)\nRETURN _0'
def test_statement_representation_returns_cypher(graph):
    node = Node()
    statement = CreateStatement(graph)
    statement.create(node)
    rep = repr(statement)
    assert rep == 'CREATE (_0)\nRETURN _0'