def samples_share(args): sample = Samples() files = Files() ids_sample = [s.rstrip("\n").split("\t")[0] for s in open(args.samples).readlines()] for id in ids_sample: # This line return the root folder root = str(files.search(studyId=args.studyId, sampleIds=id, description="INTAKE")[0]["id"]) files.share(args.user, root) try: sample.share(args.user, id, include="projects.studies.samples.name") except ServerResponseException as e: print(str(e), file=sys.stderr)
def share_samples(studyId, list_of_samples_file, user_id): file_instance = Files() sample_instance = Samples() summary = {} fd = open(list_of_samples_file) for line in fd: aline = line.rstrip("\n").split("\t") if aline: sample_name = aline[0] root_folder = aline[1] print(sample_name) sample_objs = sample_instance.search(studyId=studyId, name=sample_name) for sample_obj in sample_objs: sample_id = str(sample_obj["id"]) folders_to_share = file_instance.search(studyId=studyId, path=root_folder, sampleIds=sample_id ) for folder_to_share in folders_to_share: file_id = str(folder_to_share["id"]) file_instance.share(userId=user_id, fileId=file_id) sample_instance.share(userId=user_id, sampleId=sample_id) summary[sample_name] = [folders_to_share]