def test_gaitConsistencyKinematicPlotPanel(self):
# ----DATA-----
DATA_PATH = pyCGM2.TEST_DATA_PATH+"GaitData\CGM1-NormalGaitData-Events\Hånnibøl Lecter\\"
modelledFilenames = ["gait Trial 01.c3d","gait Trial 02.c3d"]
#---- Analysis
#--------------------------------------------------------------------------
modelInfo=None
subjectInfo=None
experimentalInfo=None
analysisInstance = analysis.makeAnalysis(DATA_PATH,modelledFilenames)
# viewer
kv = plotViewers.NormalizedKinematicsPlotViewer(analysisInstance)
kv.setConcretePlotFunction(plot.gaitConsistencyPlot)
kv.setNormativeDataset(normativeDatasets.Schwartz2008("Free"))
# filter
pf = plotFilters.PlottingFilter()
pf.setViewer(kv)
pf.plot()
def test_descriptiveKinematicPlotPanel_savePngAndPdf(self):
# ----DATA-----
DATA_PATH = pyCGM2.TEST_DATA_PATH+"GaitData\CGM1-NormalGaitData-Events\Hånnibøl Lecter\\"
modelledFilenames = ["gait Trial 01.c3d","gait Trial 02.c3d"]
DATA_PATH_OUT = pyCGM2.TEST_DATA_PATH_OUT+"GaitData\CGM1-NormalGaitData-Events\Hånnibøl Lecter\\"
files.createDir(DATA_PATH_OUT)
modelInfo=None
subjectInfo=None
experimentalInfo=None
analysisInstance = analysis.makeAnalysis(DATA_PATH,modelledFilenames)
# viewer
kv = plotViewers.NormalizedKinematicsPlotViewer(analysisInstance)
kv.setConcretePlotFunction(plot.descriptivePlot)
kv.setNormativeDataset(normativeDatasets.Schwartz2008("Free"))
# filter
pf = plotFilters.PlottingFilter()
pf.setViewer(kv)
pf.setExport(DATA_PATH_OUT,"test_descriptiveKinematicPlotPanel","png")
pf.plot()
# filter
pf = plotFilters.PlottingFilter()
pf.setViewer(kv)
pf.setExport(DATA_PATH_OUT,"test_descriptiveKinematicPlotPanel","pdf")
pf.plot()
def test_lowLevel_NormalizedKinematicsPlotViewer(self):
DATA_PATH, analysisInstance = dataTest1()
normativeDataset = normativeDatasets.NormativeData(
"Schwartz2008", "Free")
# viewer
kv = plotViewers.NormalizedKinematicsPlotViewer(analysisInstance)
kv.setConcretePlotFunction(reportPlot.gaitDescriptivePlot)
kv.setNormativeDataset(normativeDataset)
# filter
pf = plotFilters.PlottingFilter()
pf.setViewer(kv)
fig = pf.plot()
if SHOW: plt.show()
return fig
def plot_ConsistencyKinematic(DATA_PATH,
analysis,
bodyPart,
normativeDataset,
pointLabelSuffix=None,
type="Gait",
exportPdf=False,
outputName=None,
show=True,
title=None):
"""
plot_ConsistencyKinematic : display all gait cycle of time-normalized kinematic outputs
:param DATA_PATH [str]: path to your data
:param analysis [pyCGM2.Processing.analysis.Analysis]: pyCGM2 analysis instance
:param bodyPart [str]: body part (choice : LowerLimb, Trunk, UpperLimb)
:param normativeDataset [pyCGM2.Report.normativeDatasets]: pyCGM2 normative dataset instance
**optional**
:param pointLabelSuffix [string]: suffix previously added to your model outputs
:param type [string]: display gait events ( other choice than gait [default], display foot strikes only)
:param exportPdf [bool]: save as pdf (False[default])
:param outputName [string]: name of your pdf file (None[default] export your pdf with name : Global Analysis)
:param show [bool]: enable matplotlib show function
:param title [string]: change default title of the plot panel
"""
if bodyPart == "LowerLimb":
bodyPart = enums.BodyPartPlot.LowerLimb
elif bodyPart == "Trunk":
bodyPart = enums.BodyPartPlot.Trunk
elif bodyPart == "UpperLimb":
bodyPart = enums.BodyPartPlot.UpperLimb
else:
raise Exception(
"[pyCGM2] - bodyPart argument not recognized ( must be LowerLimb, Trunk or UpperLimb) "
)
if outputName is None:
outputName = "Global Analysis [" + bodyPart.name + "]"
if exportPdf:
filenameOut = str(outputName + "-consistency Kinematics [" +
bodyPart.name + "]")
kv = plotViewers.NormalizedKinematicsPlotViewer(
analysis, pointLabelSuffix=pointLabelSuffix, bodyPart=bodyPart)
if type == "Gait":
kv.setConcretePlotFunction(plot.gaitConsistencyPlot)
else:
kv.setConcretePlotFunction(plot.consistencyPlot)
if normativeDataset is not None:
kv.setNormativeDataset(normativeDataset)
# filter
pf = plotFilters.PlottingFilter()
pf.setViewer(kv)
if exportPdf: pf.setExport(DATA_PATH, filenameOut, "pdf")
if title is not None:
pf.setTitle(
str(title + "-consistency Kinematics [" + bodyPart.name + "]"))
pf.plot()
if show: plt.show()
