class test_saxs(unittest.TestCase):
saxsPilatus = "1492/bsa_013_01.edf"
maskFile = "1491/Pcon_01Apr_msk.edf"
maskRef = "1490/bioSaxsMaskOnly.edf"
maskDummy = "1488/bioSaxsMaskDummy.edf"
poniFile = "1489/bioSaxs.poni"
ai = None
tmp_dir = os.environ.get("PYFAI_TEMPDIR", os.path.join(os.path.dirname(os.path.abspath(__file__)), "tmp"))
def setUp(self):
self.edfPilatus = UtilsTest.getimage(self.__class__.saxsPilatus)
self.maskFile = UtilsTest.getimage(self.__class__.maskFile)
self.poniFile = UtilsTest.getimage(self.__class__.poniFile)
self.maskRef = UtilsTest.getimage(self.__class__.maskRef)
self.maskDummy = UtilsTest.getimage(self.__class__.maskDummy)
self.ai = AzimuthalIntegrator()
self.ai.load(self.poniFile)
if not os.path.isdir(self.tmp_dir):
os.mkdir(self.tmp_dir)
def test_mask(self):
"""test the generation of mask"""
print self.edfPilatus
data = fabio.open(self.edfPilatus).data
mask = fabio.open(self.maskFile).data
assert abs(self.ai.makeMask(data, mask=mask).astype(int) - fabio.open(self.maskRef).data).max() == 0
assert abs(self.ai.makeMask(data, mask=mask, dummy= -2, delta_dummy=1.1).astype(int) - fabio.open(self.maskDummy).data).max() == 0
class test_saxs(unittest.TestCase):
saxsPilatus = "1492/bsa_013_01.edf"
maskFile = "1491/Pcon_01Apr_msk.edf"
maskRef = "1490/bioSaxsMaskOnly.edf"
maskDummy = "1488/bioSaxsMaskDummy.edf"
poniFile = "1489/bioSaxs.poni"
ai = None
tmp_dir = os.environ.get("PYFAI_TEMPDIR", os.path.join(os.path.dirname(os.path.abspath(__file__)), "tmp"))
def setUp(self):
self.edfPilatus = UtilsTest.getimage(self.__class__.saxsPilatus)
self.maskFile = UtilsTest.getimage(self.__class__.maskFile)
self.poniFile = UtilsTest.getimage(self.__class__.poniFile)
self.maskRef = UtilsTest.getimage(self.__class__.maskRef)
self.maskDummy = UtilsTest.getimage(self.__class__.maskDummy)
self.ai = AzimuthalIntegrator()
self.ai.load(self.poniFile)
if not os.path.isdir(self.tmp_dir):
os.mkdir(self.tmp_dir)
def test_mask(self):
"""test the generation of mask"""
print self.edfPilatus
data = fabio.open(self.edfPilatus).data
mask = fabio.open(self.maskFile).data
assert abs(self.ai.makeMask(data, mask=mask).astype(int) - fabio.open(self.maskRef).data).max() == 0
assert abs(self.ai.makeMask(data, mask=mask, dummy= -2, delta_dummy=1.1).astype(int) - fabio.open(self.maskDummy).data).max() == 0
