def test_valid_input(self):
self.assertEqual(smith_waterman('cat', 'hat'), 2.0)
self.assertEqual(smith_waterman('dva', 'deeve', 2.2), 1.0)
self.assertEqual(smith_waterman('dva', 'deeve', 1, sim_score=lambda s1, s2: (2 if s1 == s2 else -1)), 2.0)
self.assertEqual(
smith_waterman('GCATGCU', 'GATTACA', gap_cost=1, sim_score=lambda s1, s2: (int(1 if s1 == s2 else -1))),
2.0)
self.assertEqual(
smith_waterman('GCATAGCU', 'GATTACA', gap_cost=1.4, sim_score=lambda s1, s2: (1.5 if s1 == s2 else 0.5)),
6.5)
def test_valid_input(self):
self.assertEqual(smith_waterman('cat', 'hat'), 2.0)
self.assertEqual(smith_waterman('dva', 'deeve', 2.2), 1.0)
self.assertEqual(
smith_waterman('dva',
'deeve',
1,
sim_score=lambda s1, s2: (2 if s1 == s2 else -1)),
2.0)
self.assertEqual(
smith_waterman('GCATGCU',
'GATTACA',
gap_cost=1,
sim_score=lambda s1, s2:
(int(1 if s1 == s2 else -1))), 2.0)
self.assertEqual(
smith_waterman('GCATAGCU',
'GATTACA',
gap_cost=1.4,
sim_score=lambda s1, s2:
(1.5 if s1 == s2 else 0.5)), 6.5)
def test_invalid_input3(self):
smith_waterman(None, None)
def test_invalid_input2(self):
smith_waterman(None, 'b')
def test_invalid_input1(self):
smith_waterman('a', None)
def test_invalid_input3(self):
smith_waterman(None, None)
def test_invalid_input2(self):
smith_waterman(None, 'b')
def test_invalid_input1(self):
smith_waterman('a', None)
def time_medium_long(self):
simfunctions.smith_waterman(_medium_string_1, _long_string_1)
def time_short_long(self):
simfunctions.smith_waterman(_short_string_1, _long_string_1)
def time_short_medium(self):
simfunctions.smith_waterman(_short_string_1, _medium_string_1)
def time_long_long(self):
simfunctions.smith_waterman(_long_string_1, _long_string_2)
def time_medium_medium(self):
simfunctions.smith_waterman(_medium_string_1, _medium_string_2)
