def get_protein_sequence(self, seq_dict, in_frame=True):
"""
Returns the translated protein sequence for this transcript in single
character space. Overrides this function in the Transcript class to make use of frame information.
"""
cds = self.get_cds(seq_dict, in_frame)
if len(cds) < 3:
return ""
return translate_sequence(cds)
def get_protein_sequence(self, seq_dict):
"""
Returns the translated protein sequence for this transcript in single
character space.
"""
cds = self.get_cds(seq_dict)
if len(cds) < 3:
return ""
return translate_sequence(self.get_cds(seq_dict).upper())