def set_point( self, prop ):
"""
Set point properties. The same properties are applied to
all the point associated with this dataset.
Points are used to show the mean value.
>>> b.set_point("color=red")
>>> b.set_point(["style", "square"])
>>> b.set_point( { 'size' : '4' })
>>> p = ChipsPoint()
>>> p.fill = False
>>> b.set_point(p)
"""
open_undo_block()
self._restore_plot()
if self.all_points:
for xx in self.all_points:
set_point( xx, prop )
self.point = get_point( self.all_points[0] )
else:
self.point = prop
close_undo_block()
def set_curve( self, prop ):
"""
Set point properties. The same properties are applied to
all the point associated with this dataset.
Curves are used to show the standard deviation, sdev.
The sdev is drawn as an "error", err.
>>> b.set_curve("err.color=red")
>>> b.set_curve(["symbol.style", "square"])
>>> b.set_curve( { 'symbol.size' : '4' })
>>> p = ChipsCurve()
>>> p.err.style = "cap"
>>> b.set_curve(p)
"""
open_undo_block()
self._restore_plot()
if self.all_curves:
for xx in self.all_curves:
set_curve( xx, prop )
self.curve = get_curve( self.all_curves[0])
else:
self.curve = prop
close_undo_block()
def __init__(self, reverse=False):
if len( self._get_all_object_name("Window")) != 1:
raise NotImplementedError("Must have one and only one window")
if len( self._get_all_object_name("Frame")) != 1:
raise NotImplementedError("Must have one and only one frame")
if len( self._get_all_object_name("Plot")) != 1:
raise NotImplementedError("Must have one and only one plot")
if len( self._get_all_object_name("Curve")) == 0:
raise NotImplementedError("Must have at least one curve.")
if len( self._get_all_object_name("Curve")) >= 7:
print "Warning: Large number of curves found. This routine works best when there are fewer than 7 curves"
open_undo_block()
self._reverse = reverse
self._get_current_curves()
self._make_frame()
self._make_drawing_area()
self._background()
self._draw()
set_current_frame( self.orig_frm)
close_undo_block()
def set_line( self, prop ):
"""
Set line properties. The same properties are applied to
all the lines associated with this dataset.
Lines are used to show the "limit" (min to max).
>>> b.set_line("color=red")
>>> b.set_line(["style", "dot"])
>>> b.set_line( { 'thickness' : '2' })
>>> l = ChipsLine()
>>> l.color = "FFFF00"
>>> b.set_line(l)
"""
open_undo_block()
self._restore_plot()
if self.all_lines:
for xx in self.all_lines:
set_line(xx, prop)
self.line = get_line( self.all_lines[0] )
else:
self.line = prop
close_undo_block()
def move(self):
"""
Move the frame. Can also use the GUI, but can be hard to select
the frame "handles" to drag it around.
"""
print "Make sure plot window has focus. Use the following keys to move the legend:"
print " w : Up"
print " s : Down"
print " a : Left"
print " d : Right"
print " q : Quit (return to prompt)"
open_undo_block()
old_frame = self._get_current_object_name("Frame")
set_current_frame( self.frm )
cid = ChipsId()
cid.coord_sys = PIXEL
def my_move_frame( x, y):
"""
"""
try:
cid = ChipsId()
cid.coord_sys = PIXEL
move_frame( cid, x, y, 1 )
except Exception, e:
print e
pass
def replace_cmap( self,filename, reverse=False, invert=False ):
"""
This utility routine can be used to change the color map of
and existing series plot.
>>> lut.replace_cmap( "/soft/ciao/data/bb.lut")
As with the init routine, the color map can be
auto-located, reversed, or inverted.
>>> lut.replace_cmap("16_colors")
>>> lut.replace_cmap("heart", invert=True )
>>> lut.replace_cmap("standard", reverse=True )
The color map that is loaded must have the same number of
colors as the original or an exception is raised.
"""
open_undo_block()
self._set_lut_window() # save current window/frame/plot info
if not self.curves:
close_undo_block()
raise RuntimeError("You can only replace a color map after it has been plotted")
# consistency check that #colors == #curves
assert len(self.hex_codes) == len( self.curves)
rr,gg,bb = get_rgb_values( filename, reverse=reverse, invert=invert )
self.hex_codes = get_rgb_hexcodes( rr, gg, bb )
if len(rr) != self.num_colors:
self._restore_window()
close_undo_block()
raise IOError("New lookup table must have same number of colors as previous table")
self.filename = filename
load_colormap( rr, gg, bb, self.cmap )
if self.image:
set_image(self.image, "colormap={}".format(self.cmap))
nn = self.num_colors
for ii in range(nn) :
# Construct the color hex value
mycol = self._get_color_code( ii)
if self.curves[ii]:
set_curve( self.curves[ii], "line.color={0} symbol.color={0}".format(mycol))
self._restore_window()
close_undo_block()
def add_colorbar( self ):
"""
We now want to add a color bar to describe the Z axis. What we do is add
an 2x2 image with values set to min/max of the Z axis (or
in our case offsets); hide the image, and then create the colorbar
Example:
>>> lut.add_colorbar()
"""
if self.image:
raise RuntimeError("Cannot set multiple colorbars")
open_undo_block()
self._set_lut_window()
self._save_limits()
# We set alpha to all 0 so we don't get an image flahsed on screen
tmin = self.min_z if self.min_z is not None else 0
tmax = self.max_z if self.max_z is not None else 1
cmap = self.cmap if self.cmap else chips_usercmap1
add_image( tmin+np.arange(4)*((tmax-tmin)/3.0),2,2,
"colormap={0} alpha=[0,0]".format(cmap))
# save the image name incase we want to change colormap
self.image = self._get_current_object_name("Image")
set_data_aspect_ratio('')
hide_image()
# then we reset alphas back to 1 so colorbar matches plotted data
set_image("alpha=[1,1]")
add_colorbar(1.075,0.5, """orientation=vertical
ticklabel.angle=90
ticklabel.halign=center
label.angle=180
label.valign=base
stem=lutcolorbar"""
)
self._restore_limits()
self._restore_window()
close_undo_block()
def _color_object( lutfile, reverse=False, invert=False, skip=0, rskip=0, plot_object="Curve", setter=set_curve, xform=_linear):
"""
Color all of a certain object type based on a color lookup table
"""
curves = _get_all_object_type_in_current_plot( plot_object)
if len(curves) == 0:
raise RuntimeError("No {}s found in the current plot.".format(plot_object.lower()))
colors = _sample_from_lut( lutfile, len(curves)+skip+rskip, reverse=reverse, invert=invert, xform=xform)
from pychips.advanced import open_undo_block, close_undo_block
open_undo_block()
for cc in zip( curves, colors[skip:] ):
setter(cc[0], "*.color={}".format(cc[1]))
close_undo_block()
def label(self, label_vals):
"""
Relabel the legend with new values
"""
if len(label_vals) != len(self.lgnd_lbls):
raise RuntimeError("Number of labels does not match the number of curves")
open_undo_block()
old_frame = self._get_current_object_name("Frame")
set_current_frame( self.frm )
for lbid,lbl in zip( self.lgnd_lbls, label_vals ):
set_label_text( lbid, lbl )
set_current_frame( old_frame )
close_undo_block()
def update(self):
"""
Update the curve properties (symbole/line properties)
after the legend has been created
"""
open_undo_block()
old_frame = self._get_current_object_name("Frame")
for usr,lgn,lpt in zip( self.usr_crvs, self.lgnd_crvs, self.lgnd_pnts):
set_current_frame( self.orig_frm)
cc = get_curve( usr )
set_current_frame( self.frm )
set_curve( lgn, cc )
set_curve( lgn, "symbol.style=none")
pnt = self._get_point_properties( cc.symbol )
set_point( lpt, pnt )
set_current_frame( old_frame )
close_undo_block()
def clear(self):
"""
clear all plot elements associated with this object, only.
The plot is retained.
>>> b.clear()
"""
open_undo_block()
self._restore_plot()
if self.all_regions:
for d in self.all_regions: delete_region(d)
if self.all_lines:
for d in self.all_lines: delete_line(d)
if self.all_points:
for d in self.all_points: delete_point(d)
if self.all_curves:
for d in self.all_curves: delete_curve(d)
close_undo_block()
def set_curve( self, args ):
"""
Loop thru curves appling the style to each
>>> lut.set_curve("symbol.style=circle")
>>> lut.set_curve( ["symbol.size", "3"] )
>>> lut.set_curve( { "symbol.fill" : True } )
>>> cc = ChipsCurve()
>>> cc.symbol.angle = 270
>>> lut.set_curve(cc)
Users should not set the color parameters.
"""
open_undo_block()
self._set_lut_window()
for cc in self.curves:
if cc:
set_curve(cc, args)
self._restore_window()
close_undo_block()
def set_region( self, prop ):
"""
Set region properties. The same properties are applied to
all the regions associated with this dataset.
>>> b.set_region("*.color=red")
>>> b.set_region(["fill.style", "userfill1"])
>>> b.set_region( { 'edge.style' : 'none' })
>>> r = ChipsRegion()
>>> r.opacity = 1.0
>>> b.set_region(r)
"""
open_undo_block()
self._restore_plot()
if self.all_regions:
for xx in self.all_regions:
set_region( xx, prop )
self.region = get_region( self.all_regions[0] )
else:
self.region = prop
close_undo_block()
def plot( self, xx, yy, zz, stem="lutpoint", zgrid=None, zmin=None, zmax=None, sizefn=lambda x: 1, thickfn=lambda x: 1 ):
"""
Plots the X, Y for each Z slice color coded by the LUT
>>> x = np.random.rand(100)
>>> y = np.random.rand(100)
>>> z = np.arange(100)
>>> lut.plot( x, y, z )
The ZZ values are split into an equal number of bins going from
min(zz) to max(zz). The number of bins is equal to the
number of colors in LUT. The zgrid can be
explicitly input but must have the same number of grid
points as the number of colors
>>> zlo = np.arange(256)
>>> zhi = zlo + 1
>>> zlo[0] = -999
>>> zhi[-1] = 999
>>> zgrid = zip(zlo,zhi)
>>> plot(x, y, z, zgrid=zgrid)
Note: The color bar tick labels will not correctly
show the arbitrary zgrid values.
A curve is created for each color. All the curves have
a name that starts with the prefix "lutpoint" which can
be changed using the 'stem' argument.
>>> plot(x, y, z, stem="asoldata")
>>> info()
...
Curve [asoldata1]
"""
if self.curves:
raise RuntimeError("The same object cannot be used to plot multiple series")
# All commands in the routine are undone with a single undo()
open_undo_block()
nn = self.num_colors
if not zgrid:
# Determine the Z bins to plot; use linear/fixed bin widths
self.min_z = min(zz) if zmin is None else zmin
self.max_z = max(zz) if zmax is None else zmax
dt = float(self.max_z - self.min_z)/(nn-1)
tlo = self.min_z + dt* np.arange(nn)
thi = tlo + dt
thi[-1] = np.inf # make sure max value is always included (< vs <= below)
else:
# check zgrid to make sure is OK
if len(zgrid) != self.num_colors:
close_undo_block()
raise ValueError("zgrid must have same number of elements as number of colors")
if not all( [len(zgrid[i]) == 2 for i in range(nn)] ):
close_undo_block()
raise ValueError("zgrid must have 2 elements in each slot")
try:
tlo = np.array( [float(zgrid[i][0]) for i in range(nn) ])
thi = np.array( [float(zgrid[i][1]) for i in range(nn) ])
self.min_z = tlo[0]
self.max_z = thi[-1]
except:
close_undo_block()
raise ValueError("All elements of zgrid must be numbers")
#We add a curve w/ no line/symbol just to get axes setup
add_curve( xx, yy, "symbol.style=none line.style=none stem=delme")
self._save_limits()
delname = self._get_current_object_name("Curve")
self.lut_win, self.lut_frame,self.lut_plot = self._get_window_info()
all_curves = []
for ii in range(nn) :
# Construct the color hex value
mycol = self._get_color_code( ii )
# filter data in i-th range
jj, = np.where( (zz >= tlo[ii]) & (zz < thi[ii]))
if len(jj) == 0:
all_curves.append(None)
continue
cc = ChipsCurve()
cc.stem=stem
cc.line.style=None
cc.symbol.style="point"
cc.symbol.color=mycol
cc.line.color=mycol
cc.symbol.size=sizefn(ii)
cc.line.thickness=thickfn(ii)
add_curve( np.array(xx)[jj], np.array(yy)[jj], cc )
all_curves.append( self._get_current_object_name("Curve") )
# save list of curves plotted
self.curves = all_curves
self.order = 1 # 1st color plotted on bottom
# delete initial curve used to setup axes
delete_curve(delname)
close_undo_block()
def plot( self, qlo=0.25, qhi=0.75, limit=True, mean=True, sdev=False) :
"""
Box and whiskers plot
The default is to plot the quartiles: data representing
the 25%, 50% (median), and 75% of the values in each
X bin with a line through the mean showing the
min and max values.
>>> b.plot()
The quantiles can be changed
>>> b.plot( qlo=0.33, qhi=0.67 )
>>> b.plot( qlo=0.05, qhi=0.95 )
The limit (min/max) line aka the whiskers can be disabled
>>> b.plot( limit=False)
and the mean value (point) can also be removed
>>> b.plot( mean=False)
"""
open_undo_block()
try:
self.clear()
except:
#Window may have been deleted/closed/etc.
pass
# setup axes
add_curve( self.xx, self.yy, "stem=delme line.style=none symbol.style=none")
delete_curve(self._get_current_object_name("Curve"))
# save plot info
self.lut_win = self._get_current_object_name("Window")
self.lut_frame = self._get_current_object_name("Frame")
self.lut_plot = self._get_current_object_name("Plot")
self.all_regions = []
self.all_points = []
self.all_lines = []
self.all_curves = []
self.qlo = qlo
self.qhi = qhi
self.limit = limit
self.mean = mean
self.sdev = sdev
self.grid_regions = {}
for g in self.grid:
xlo = g[0]
xhi = g[1]
y0 = self.y0[g]
if y0 is None:
continue
sz = len(y0)
if 0 == sz:
continue
# TODO move this into the fill grid method? qlo and qhi
# would need to move to different i/f
q000=np.min(y0)
q100=np.max(y0)
q050=np.median(y0)
qmid=np.mean(y0)
qstd =np.std(y0)
q033=y0[np.max([int(qlo*sz+0.5),0])]
q066=y0[np.min([int(qhi*sz+0.5),sz-1])]
xmid = (xhi+xlo)/2.0
self.grid_regions[g] = []
if q033 != q050:
add_region( [xlo, xhi, xhi, xlo], [q033, q033, q050, q050], self.region )
self.all_regions.append( self._get_current_object_name("Region"))
self.grid_regions[g].append(self._get_current_object_name("Region"))
if q050 != q066:
add_region( [xlo, xhi, xhi, xlo], [q050, q050, q066, q066], self.region )
self.all_regions.append( self._get_current_object_name("Region"))
self.grid_regions[g].append(self._get_current_object_name("Region"))
if True == mean:
add_point( xmid, qmid, self.point )
self.all_points.append(self._get_current_object_name("Point"))
if True == limit:
add_line( xmid, q000, xmid, q100 )
self.all_lines.append(self._get_current_object_name("Line"))
if True == sdev:
add_curve( [xmid], [qmid], [qstd], self.curve )
self.all_curves.append(self._get_current_object_name("Curve"))
close_undo_block()
