def setUpClass(cls):
aspec = AutomatedRunSpec()
aspec.mass_spectrometer = 'jan'
aspec.labnumber = '17005'
aspec.aliquot = 95
a = AutomatedRun()
a.script_info.measurement_script_name = 'unknown_peak_hop'
s = ArgusSpectrometerManager()
ion = IonOpticsManager(spectrometer=s.spectrometer)
s.load(db_mol_weights=False)
a.spectrometer_manager = s
a.ion_optics_manager = ion
a.isotope_group = ArArAge()
a.isotope_group.j = ufloat(0.001, 1e-6)
a._alive = True
a.uuid = '12345-ABCDE'
a.spec = aspec
a._measured = True
a._save_enabled = True
cls.arun = a
def setUpClass(cls):
aspec = AutomatedRunSpec()
aspec.mass_spectrometer = 'jan'
aspec.labnumber = '17005'
aspec.aliquot = 82
aspec.syn_extraction='test'
a = AutomatedRun()
a.script_info.measurement_script_name = 'unknown'
a.script_info.extraction_script_name = 'pause'
s = ArgusSpectrometerManager()
ion = IonOpticsManager(spectrometer=s.spectrometer)
s.load()
a.spectrometer_manager = s
a.ion_optics_manager = ion
a.isotope_group = ArArAge()
a._alive = True
a.uuid = '12345-ABCDE'
a.spec = aspec
a._measured = True
a.persister.save_enabled = True
a.persister.datahub=dh=Datahub(bind_mainstore=False)
dh.mainstore.db.kind='mysql'
dh.mainstore.db.username='******'
dh.mainstore.db.name='pychrondata_dev'
dh.mainstore.db.password='******'
dh.mainstore.db.connect()
cls.arun = a
def setUpClass(cls):
aspec = AutomatedRunSpec()
aspec.mass_spectrometer = 'jan'
aspec.labnumber = '17005'
aspec.aliquot = 95
a = AutomatedRun()
a.script_info.measurement_script_name = 'unknown_peak_hop'
s = ArgusSpectrometerManager()
ion = IonOpticsManager(spectrometer=s.spectrometer)
s.load(db_mol_weights=False)
a.spectrometer_manager = s
a.ion_optics_manager = ion
a.isotope_group = ArArAge()
a.isotope_group.j=ufloat(0.001, 1e-6)
a._alive = True
a.uuid = '12345-ABCDE'
a.spec = aspec
a._measured = True
a._save_enabled = True
cls.arun = a
def test_save_persister():
paths.build('_dev')
dvc = DVC(bind=False)
dvc.db.connect()
per = DVCPersister(dvc=dvc)
run_spec = AutomatedRunSpec()
run_spec.labnumber = '10001'
run_spec.project = 'Test'
arar = ArArAge()
arar.isotopes['Ar40'] = Isotope(xs=[1, 2, 3], ys=[1, 2, 3],
name='Ar40', detector='H1')
sd = {}
dd = {'H1': 100}
gd = {'H1': 1.021}
per_spec = PersistenceSpec(run_spec=run_spec,
arar_age=arar,
spec_dict=sd,
defl_dict=dd,
gains=gd,
positions=[1, ],
experiment_queue_name='testexp.txt',
measurement_name='jan_unknown.py',
extraction_name='foo.py')
per.per_spec_save(per_spec)
def setUpClass(cls):
aspec = AutomatedRunSpec()
aspec.mass_spectrometer = 'jan'
aspec.labnumber = '17005'
aspec.aliquot = 82
a = AutomatedRun()
a.script_info.measurement_script_name = 'unknown'
s = SpectrometerManager()
ion = IonOpticsManager(spectrometer=s.spectrometer)
s.load(db_mol_weights=False)
a.spectrometer_manager = s
a.ion_optics_manager = ion
a.arar_age = ArArAge()
a._alive = True
a.uuid = '12345-ABCDE'
a.spec = aspec
a._measured = True
a._save_enabled = True
cls.arun = a
def gen_mock_runspec():
for p, l, _ in runs:
rs = AutomatedRunSpec()
rs.project = p
rs.labnumber = l
yield rs
