def load(self, db_mol_weights=True):
self.debug('******************************* LOAD Spec')
if db_mol_weights:
# get the molecular weights from the database
dbm = IsotopeDatabaseManager(application=self.application,
warn=False)
self.db = dbm
if dbm.isConnected():
self.info('loading molecular_weights from database')
mws = dbm.db.get_molecular_weights()
# convert to a dictionary
m = dict([(mi.name, mi.mass) for mi in mws])
self.spectrometer.molecular_weights = m
if not self.spectrometer.molecular_weights:
import csv
# load the molecular weights dictionary
p = os.path.join(paths.spectrometer_dir, 'molecular_weights.csv')
if os.path.isfile(p):
self.info('loading "molecular_weights.csv" file')
with open(p, 'U') as f:
reader = csv.reader(f, delimiter='\t')
args = [[l[0], float(l[1])] for l in reader]
self.spectrometer.molecular_weights = dict(args)
else:
self.info('writing a default "molecular_weights.csv" file')
# make a default molecular_weights.csv file
from pychron.spectrometer.molecular_weights import MOLECULAR_WEIGHTS as mw
with open(p, 'U') as f:
writer = csv.writer(f, delimiter='\t')
data = [a for a in mw.itervalues()]
data = sorted(data, key=lambda x: x[1])
for row in data:
writer.writerow(row)
self.spectrometer.molecular_weights = mw
#config = self.get_configuration(path=os.path.join(paths.spectrometer_dir, 'detectors.cfg'))
#for name in config.sections():
# relative_position = self.config_get(config, name, 'relative_position', cast='float')
# color = self.config_get(config, name, 'color', default='black')
# default_state = self.config_get(config, name, 'default_state', default=True, cast='boolean')
# isotope = self.config_get(config, name, 'isotope')
# kind = self.config_get(config, name, 'kind', default='Faraday', optional=True)
# self.spectrometer.add_detector(name=name,
# relative_position=relative_position,
# color=color,
# active=default_state,
# isotope=isotope,
# kind=kind)
self.spectrometer.load()
return True
def load(self, db_mol_weights=True):
self.debug('******************************* LOAD Spec')
if db_mol_weights:
# get the molecular weights from the database
dbm = IsotopeDatabaseManager(application=self.application,
warn=False)
self.db = dbm
if dbm.isConnected():
self.info('loading molecular_weights from database')
mws = dbm.db.get_molecular_weights()
# convert to a dictionary
m = dict([(mi.name, mi.mass) for mi in mws])
self.spectrometer.molecular_weights = m
if not self.spectrometer.molecular_weights:
import csv
# load the molecular weights dictionary
p = os.path.join(paths.spectrometer_dir, 'molecular_weights.csv')
if os.path.isfile(p):
self.info('loading "molecular_weights.csv" file')
with open(p, 'U') as f:
reader = csv.reader(f, delimiter='\t')
args = [[l[0], float(l[1])] for l in reader]
self.spectrometer.molecular_weights = dict(args)
else:
self.info('writing a default "molecular_weights.csv" file')
# make a default molecular_weights.csv file
from pychron.spectrometer.molecular_weights import MOLECULAR_WEIGHTS as mw
with open(p, 'U') as f:
writer = csv.writer(f, delimiter='\t')
data = [a for a in mw.itervalues()]
data = sorted(data, key=lambda x: x[1])
for row in data:
writer.writerow(row)
self.spectrometer.molecular_weights = mw
#config = self.get_configuration(path=os.path.join(paths.spectrometer_dir, 'detectors.cfg'))
#for name in config.sections():
# relative_position = self.config_get(config, name, 'relative_position', cast='float')
# color = self.config_get(config, name, 'color', default='black')
# default_state = self.config_get(config, name, 'default_state', default=True, cast='boolean')
# isotope = self.config_get(config, name, 'isotope')
# kind = self.config_get(config, name, 'kind', default='Faraday', optional=True)
# self.spectrometer.add_detector(name=name,
# relative_position=relative_position,
# color=color,
# active=default_state,
# isotope=isotope,
# kind=kind)
self.spectrometer.load()
return True
def load(self, db_mol_weights=True):
spec = self.spectrometer
mftable = spec.magnet.mftable
self.debug('******************************* LOAD Spec')
if db_mol_weights:
# get the molecular weights from the database
# dbm = IsotopeDatabaseManager(application=self.application,
# warn=False)
dbm = self.application.get_service(
'pychron.database.isotope_database_manager.IsotopeDatabaseManager'
)
if dbm and dbm.is_connected():
self.info('loading molecular_weights from database')
mws = dbm.db.get_molecular_weights()
# convert to a dictionary
m = dict([(mi.name, mi.mass) for mi in mws])
spec.molecular_weights = m
mftable.db = dbm.db
if not spec.molecular_weights:
import csv
# load the molecular weights dictionary
p = os.path.join(paths.spectrometer_dir, 'molecular_weights.csv')
if os.path.isfile(p):
self.info('loading "molecular_weights.csv" file')
with open(p, 'U') as f:
reader = csv.reader(f, delimiter='\t')
args = [[l[0], float(l[1])] for l in reader]
spec.molecular_weights = dict(args)
else:
self.info('writing a default "molecular_weights.csv" file')
# make a default molecular_weights.csv file
from pychron.spectrometer.molecular_weights import MOLECULAR_WEIGHTS as mw
with open(p, 'U') as f:
writer = csv.writer(f, delimiter='\t')
data = [a for a in mw.itervalues()]
data = sorted(data, key=lambda x: x[1])
for row in data:
writer.writerow(row)
spec.molecular_weights = mw
self.spectrometer.load()
mftable.spectrometer_name = self.spectrometer.name
return True
def load(self, db_mol_weights=True):
spec = self.spectrometer
mftable = spec.magnet.mftable
self.debug("******************************* LOAD Spec")
if db_mol_weights:
# get the molecular weights from the database
# dbm = IsotopeDatabaseManager(application=self.application,
# warn=False)
dbm = self.application.get_service("pychron.database.isotope_database_manager.IsotopeDatabaseManager")
if dbm and dbm.is_connected():
self.info("loading molecular_weights from database")
mws = dbm.db.get_molecular_weights()
# convert to a dictionary
m = dict([(mi.name, mi.mass) for mi in mws])
spec.molecular_weights = m
mftable.db = dbm.db
if not spec.molecular_weights:
import csv
# load the molecular weights dictionary
p = os.path.join(paths.spectrometer_dir, "molecular_weights.csv")
if os.path.isfile(p):
self.info('loading "molecular_weights.csv" file')
with open(p, "U") as f:
reader = csv.reader(f, delimiter="\t")
args = [[l[0], float(l[1])] for l in reader]
spec.molecular_weights = dict(args)
else:
self.info('writing a default "molecular_weights.csv" file')
# make a default molecular_weights.csv file
from pychron.spectrometer.molecular_weights import MOLECULAR_WEIGHTS as mw
with open(p, "U") as f:
writer = csv.writer(f, delimiter="\t")
data = [a for a in mw.itervalues()]
data = sorted(data, key=lambda x: x[1])
for row in data:
writer.writerow(row)
spec.molecular_weights = mw
self.spectrometer.load()
mftable.spectrometer_name = self.spectrometer.name
return True