def setUpClass(cls):
aspec = AutomatedRunSpec()
aspec.mass_spectrometer = 'jan'
aspec.labnumber = '17005'
aspec.aliquot = 95
a = AutomatedRun()
a.script_info.measurement_script_name = 'unknown_peak_hop'
s = ArgusSpectrometerManager()
ion = IonOpticsManager(spectrometer=s.spectrometer)
s.load(db_mol_weights=False)
a.spectrometer_manager = s
a.ion_optics_manager = ion
a.isotope_group = ArArAge()
a.isotope_group.j=ufloat(0.001, 1e-6)
a._alive = True
a.uuid = '12345-ABCDE'
a.spec = aspec
a._measured = True
a._save_enabled = True
cls.arun = a
def setUpClass(cls):
aspec = AutomatedRunSpec()
aspec.mass_spectrometer = 'jan'
aspec.labnumber = '17005'
aspec.aliquot = 82
aspec.syn_extraction='test'
a = AutomatedRun()
a.script_info.measurement_script_name = 'unknown'
a.script_info.extraction_script_name = 'pause'
s = ArgusSpectrometerManager()
ion = IonOpticsManager(spectrometer=s.spectrometer)
s.load(db_mol_weights=False)
a.spectrometer_manager = s
a.ion_optics_manager = ion
a.isotope_group = ArArAge()
a._alive = True
a.uuid = '12345-ABCDE'
a.spec = aspec
a._measured = True
a.persister.save_enabled = True
a.persister.datahub=dh=Datahub(bind_mainstore=False)
dh.mainstore.db.kind='mysql'
dh.mainstore.db.username='******'
dh.mainstore.db.name='pychrondata_dev'
dh.mainstore.db.password='******'
dh.mainstore.db.connect()
cls.arun = a
def run():
hp = hpy()
globalv.experiment_debug = True
# t = ExperimentEditorTask()
# p = os.path.join(paths.experiment_dir, 'demo.txt')
# t._open_experiment(p)
q = ExperimentQueue(delay_before_analyses=0,
delay_between_analyses=0)
q.automated_runs = [
AutomatedRunSpec(
labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'
),
AutomatedRunSpec(
labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'
),
AutomatedRunSpec(
labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'
),
AutomatedRunSpec(
labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'
),
AutomatedRunSpec(
labnumber='61312',
duration=2.0,
extraction_script='pause',
measurement_script='air',
mass_spectrometer='jan'
)
]
dbman = isotope_manager_factory()
specman = ArgusSpectrometerManager()
specman.load()
ex = ExperimentExecutor(db=dbman.db,
spectrometer_manager=specman,
extraction_line_manager='',
executable=True,
)
ex.monitor = None
ex.experiment_queues = [q, ]
ex.experiment_queue = q
hp.setrelheap()
t = ex.execute()
t.join()
# count_instances(group='sqlalchemy')
return hp
