def from_SeqRecord(cls,
record: _SeqRecord,
*args,
linear=True,
circular=False,
n=5e-14,
**kwargs):
obj = cls.__new__(cls) # Does not call __init__
obj._seq = _Dseq.quick(
str(record.seq),
_rc(str(record.seq)),
ovhg=0,
linear=linear,
circular=circular,
)
obj.id = record.id
obj.name = record.name
obj.description = record.description
obj.dbxrefs = record.dbxrefs
obj.annotations = {"molecule_type": "DNA"}
obj.annotations.update(record.annotations)
obj._per_letter_annotations = record._per_letter_annotations
obj.features = record.features
obj.map_target = None
obj.n = n
return obj
def from_string(cls,
record: str = "",
*args,
linear=True,
circular=False,
n=5e-14,
**kwargs):
# def from_string(cls, record:str="", *args, linear=True, circular=False, n = 5E-14, **kwargs):
obj = cls.__new__(cls) # Does not call __init__
obj._seq = _Dseq.quick(record,
_rc(record),
ovhg=0,
linear=linear,
circular=circular)
obj.id = _pretty_str("id")
obj.name = _pretty_str("name")
obj.description = _pretty_str("description")
obj.dbxrefs = []
obj.annotations = {"molecule_type": "DNA"}
obj._per_letter_annotations = {}
obj.features = []
obj.map_target = None
obj.n = n
obj.__dict__.update(kwargs)
return obj
