def setUp(self):
lp.set_caching_enabled(False)
if not self.is_setup:
utils.setup_logging()
# load equations
self.dirpath = os.path.dirname(os.path.realpath(__file__))
gasname = os.path.join(self.dirpath, 'test.cti')
# first check test config
gasname = get_mechanism_file()
# load the gas
gas = ct.Solution(gasname)
# the mechanism
elems, specs, reacs = read_mech_ct(gasname)
# and finally check for a test platform
platform = get_platform_file()
try:
if platform is None:
platform = ''
raise OSError
platform = build_and_validate('test_platform_schema.yaml',
platform)
except (OSError, IOError):
logger = logging.getLogger(__name__)
logger.warn('Test platform file {} was not found, reverting '
'to default.'.format(platform))
platform = None
self.store = storage(platform, gas, specs, reacs)
self.is_setup = True
def main(args=None):
lp.set_caching_enabled(False)
utils.setup_logging()
if args is None:
# command line arguments
parser = ArgumentParser(description='Tests pyJac versus an'
' autodifferentiated jacobian\n')
parser.add_argument('-w', '--working_directory',
type=str,
default='performance',
help='Directory storing the mechanisms / data.'
)
parser.add_argument('-t', '--test_matrix',
type=str,
help='The platforms / tests to run, as well as '
'possible memory limits. For an example see'
'the pyjac/examples/test_matrix.yaml included with'
'pyJac'
)
parser.add_argument('-r', '--runtype',
choices=['jac', 'spec', 'both'],
default='both',
help='The type of validation test to run, Jacobian [jac]'
' or species rates [spec], or [both].')
parser.add_argument('-p', '--prefix',
type=str,
default='',
help='A prefix to store the output of this test in'
'for each mechanism in the working_directory.'
'This can be a helpful tool on a cluster to '
'run multiple tests at once on different platforms')
args = parser.parse_args()
methods = []
if args.runtype == 'jac':
methods = [jacobian_tester]
elif args.runtype == 'spec':
methods = [species_rate_tester]
else:
methods = [species_rate_tester, jacobian_tester]
for m in methods:
m(args.working_directory, args.test_matrix, args.prefix)
def setUp(self):
lp.set_caching_enabled(False)
if not self.is_setup:
utils.setup_logging()
# first check test config
gasname = get_mechanism_file()
# load the gas
gas = ct.Solution(gasname)
# the mechanism
elems, specs, reacs = read_mech_ct(gasname)
# get sort type
sorting = get_rxn_sorting()
if sorting != reaction_sorting.none:
# get ordering
ordering = sort_reactions(reacs, sorting, return_order=True)
# and apply
reacs = sort_reactions(reacs, sorting)
ct_reacs = gas.reactions()
# and apply to gas
gas = ct.Solution(thermo='IdealGas',
kinetics='GasKinetics',
species=gas.species(),
reactions=[ct_reacs[i] for i in ordering])
# and reassign
utils.reassign_species_lists(reacs, specs)
# and finally check for a test platform
platform = get_platform_file()
try:
if platform is None:
platform = ''
raise OSError
platform = build_and_validate('test_platform_schema.yaml',
platform)
except (OSError, IOError):
logger = logging.getLogger(__name__)
logger.warn('Test platform file {} was not found, reverting '
'to default.'.format(platform))
platform = None
self.store = storage(platform, gas, specs, reacs)
self.is_setup = True
def main(args=None):
if args is None:
utils.setup_logging()
utils.create()