def test_run(self):
plt.style.use('seaborn')
mpl.rcParams['font.family'] = 'serif'
# 生成市场环境
me_gbm = MarketEnvironment('me_gbm', dt.datetime(2020, 1, 1))
me_gbm.add_constant('initial_value', 36.0)
me_gbm.add_constant('volatility', 0.2)
me_gbm.add_constant('final_date', dt.datetime(2020, 12, 31))
me_gbm.add_constant('currency', 'EUR')
me_gbm.add_constant('frequency', 'M')
me_gbm.add_constant('paths', 1000)
csr = ConstantShortRate('csr', 0.06)
me_gbm.add_curve('discount_curve', csr)
# 生成几何布朗运动模拟类
gbm = GeometricBrownianMotion('gbm', me_gbm)
gbm.generate_time_grid()
print('时间节点：{0};'.format(gbm.time_grid))
paths_1 = gbm.get_instrument_values()
print('paths_1: {0};'.format(paths_1.round(3)))
gbm.update(volatility=0.5)
paths_2 = gbm.get_instrument_values()
# 可视化结果
plt.figure(figsize=(10, 6))
p1 = plt.plot(gbm.time_grid, paths_1[:, :10], 'b')
p2 = plt.plot(gbm.time_grid, paths_2[:, :10], 'r-')
legend1 = plt.legend([p1[0], p2[0]],
['low volatility', 'high volatility'],
loc=2)
plt.gca().add_artist(legend1)
plt.xticks(rotation=30)
plt.show()
def test_run(self):
# 生成几何布朗运动市场环境
me_gbm = MarketEnvironment('me_gbm', dt.datetime(2020, 1, 1))
me_gbm.add_constant('initial_value', 36.0)
me_gbm.add_constant('volatility', 0.2)
me_gbm.add_constant('final_date', dt.datetime(2020, 12, 31))
me_gbm.add_constant('currency', 'EUR')
me_gbm.add_constant('frequency', 'M')
me_gbm.add_constant('paths', 1000)
csr = ConstantShortRate('csr', 0.06)
me_gbm.add_curve('discount_curve', csr)
# 生成几何布朗运动模拟类
gbm = GeometricBrownianMotion('gbm', me_gbm)
gbm.generate_time_grid()
# 生成跳跃扩散市场环境
me_jd = MarketEnvironment('me_jd', dt.datetime(2020, 1, 1))
me_jd.add_constant('lambda', 0.3)
me_jd.add_constant('mu', -0.75)
me_jd.add_constant('delta', 0.1)
me_jd.add_environment(me_gbm)
# 生成跳跃扩散模拟类
jd = JumpDiffusion('jd', me_jd)
paths_3 = jd.get_instrument_values()
jd.update(lamb=0.9)
paths_4 = jd.get_instrument_values()
# 绘制图形
plt.figure(figsize=(10, 6))
p1 = plt.plot(gbm.time_grid, paths_3[:, :10], 'b')
p2 = plt.plot(gbm.time_grid, paths_4[:, :10], 'r-')
lengend1 = plt.legend([p1[0], p2[0]],
['low intensity', 'high intensity'],
loc=3)
plt.gca().add_artist(lengend1)
plt.xticks(rotation=30)
plt.show()
def test_dip(self):
xf = arange(0, 425)
dips = self.fm.get_dip(xf)
plt.plot(xf,dips)
plt.grid('on')
plt.gca().set_xticks(self.fm.Y_PC)
plt.ylim([0, 30])
plt.gca().invert_yaxis()
plt.savefig(join(self.outs_dir, '~y_fc_dips.png'))
plt.close()
def plot_mat(self, mat, fn):
plt.matshow(asarray(mat.todense()))
plt.axis('equal')
sh = mat.shape
plt.gca().set_yticks(range(0, sh[0]))
plt.gca().set_xticks(range(0, sh[1]))
plt.grid('on')
plt.colorbar()
plt.savefig(join(self.outs_dir, fn))
plt.close()
def test_dip(self):
xf = arange(0, 425)
dips = self.fm.get_dip(xf)
plt.plot(xf, dips)
plt.grid('on')
plt.gca().set_xticks(self.fm.Y_PC)
plt.ylim([0, 30])
plt.gca().invert_yaxis()
plt.savefig(join(self.outs_dir, '~y_fc_dips.png'))
plt.close()
def plot_mat(self, mat, fn):
plt.matshow(asarray(mat.todense()))
plt.axis('equal')
sh = mat.shape
plt.gca().set_yticks(range(0,sh[0]))
plt.gca().set_xticks(range(0,sh[1]))
plt.grid('on')
plt.colorbar()
plt.savefig(join(self.outs_dir, fn))
plt.close()
def biaozhukedu(dfc, weibiao):
if weibiao == dfc.index.max():
kedus = [dfc.loc[weibiao]]
else:
kedus = [dfc.loc[weibiao], dfc.loc[dfc.index.max()]]
# print(type(kedus[0]))
for ii in range(len(kedus)):
kedu = kedus[ii]
if (len(dfc.index)) > 12:
idx = kedu.name
else:
idx = list(dfc.index).index(kedu.name)
if not np.isnan(kedu.iloc[0]):
plt.plot([idx, idx], [0, kedu.iloc[0]], 'c--')
plt.annotate(str(kedu.name),
xy=(idx, 0),
xycoords='data',
xytext=(-20, -20),
textcoords='offset points',
color='r',
arrowprops=dict(arrowstyle="->",
connectionstyle="arc3,rad=0"))
for i in range(len(kedu)):
if np.isnan(kedu.iloc[i]):
# print(kedu.iloc[i])
# print(type(kedu.iloc[i]))
continue
plt.scatter([
idx,
], [kedu.iloc[i]], 50, color='Wheat')
# global ywananchor
if kedu.map(lambda x: abs(x)).max() >= ywananchor:
kedubiaozhi = "%.1f万" % (kedu.iloc[i] / 10000)
plt.gca().yaxis.set_major_formatter(
FuncFormatter(lambda x, pos: "%d万" % int(x / 10000))
) # 纵轴主刻度文本用y_formatter函数计算
else:
kedubiaozhi = "%d" % kedu.iloc[i]
fontsize = 8
if (i % 2) == 0:
zhengfu = -1
else:
zhengfu = 0.4
plt.annotate(
kedubiaozhi,
xy=(idx, kedu.iloc[i]),
xycoords='data',
xytext=(len(kedubiaozhi) * fontsize * zhengfu,
int(len(kedubiaozhi) * fontsize * (-1) * zhengfu / 2)),
textcoords='offset points',
fontsize=fontsize,
arrowprops=dict(arrowstyle="->",
connectionstyle="arc3,rad=.2",
color='Purple'))
def drawnow(self):
plt.cla()
imshow(self.img)
axes = plt.gca()
for i1 in range(0, len(self.poly_draw)):
axes.add_patch(self.poly_draw[i1])
plt.gca().invert_yaxis()
plt.draw()
def __init__(self,
ref_params,
save_state_freq=500,
overwrite_state=True,
plot=False):
"""
:param ref_params: instance of refinement Parameters (LMP in code below)
:param save_state_freq: how often to save all models (will be overwritten each time)
"""
num_params = len(ref_params)
self.vary = np.zeros(num_params).astype(bool)
for p in ref_params.values():
self.vary[p.xpos] = not p.fix
self.x0 = np.ones(num_params)
self.g = None
self.ref_params = ref_params
self.iternum = 0
self.all_times = []
self.save_state_freq = save_state_freq
self.overwrite_state = overwrite_state
self.med_offsets = [
] # median prediction offsets(new number gets added everytime write_output_files is called)
self.med_iternums = []
self.plot = plot and COMM.rank == 0
if self.plot:
self.fig = plt.figure()
self.ax = plt.gca()
plt.draw()
plt.pause(0.1)
def plot_2d_mixing_space(self, features, hold=False):
'''
Draws a 2D (triangular) mixing space.
'''
codes = [
VectorPath.MOVETO, VectorPath.LINETO, VectorPath.LINETO,
VectorPath.CLOSEPOLY
]
verts = features[..., 0:2].tolist()
verts.append((0, 0)) # Dummy vertex
path = VectorPath(verts, codes)
patch = patches.PathPatch(path, facecolor='black', alpha=0.3, lw=0)
plt.gca().add_patch(patch)
if not hold:
plt.show()
def cumulative_freq_plot(rast,
band=0,
mask=None,
bins=100,
xlim=None,
nodata=-9999):
'''
Plots an empirical cumulative frequency curve for the input raster array
in a given band.
'''
if mask is not None:
arr = binary_mask(rast, mask)
else:
arr = rast.copy()
if nodata is not None:
arr = subarray(arr)
values, base = np.histogram(arr, bins=bins)
cumulative = np.cumsum(values) # Evaluate the cumulative distribution
plt.plot(base[:-1], cumulative, c='blue') # Plot the cumulative function
plt.set_title('Empirical Cumulative Distribution: Band %d' % band)
if xlim is not None:
axes = plt.gca()
axes.set_xlim(xlim)
plt.show()
return arr
def plot(filename='area_and_overlap.csv'):
"""
Quick and dirty plotting of the data output by area_and_overlap_csv. Would
likely want to do this more interactively, so consider this a record of
plotting done and a starting point for more plotting.
You will likely want to invoke ipython with the --matplotlib switch and
the backend of your choice (we used tk):
ipython --matplotlib tk
"""
from matplotlib import pyplot
from pylab import plt, show
in_file = csv.reader(open(filename, 'rb'))
areas = []
overlaps = []
for row in in_file:
try:
areas.append(float(row[0]))
overlaps.append(float(row[1]))
except Exception:
print row[0], row[1]
fig = pyplot.figure()
ax = plt.gca()
ax.set_ylabel('parcel area (sq ft, log)')
ax.set_yscale('log')
ax.set_xlabel('% of parcel that overlaps with building polygons')
ax.plot(overlaps, areas, 'o', c='blue', alpha=0.05, markeredgecolor='none')
show()
def plotData(data,
label_x,
label_y,
label_pos,
label_neg,
axes=None,
is_show=True):
# 获得正负样本的下标(即哪些是正样本，哪些是负样本)
#如果第3列为0则赋值给neg
neg = data[:, 2] == 0
#如果第3列为1则赋值给pos
pos = data[:, 2] == 1
if axes == None:
axes = plt.gca()
axes.scatter(data[pos][:, 0],
data[pos][:, 1],
marker='+',
c='k',
s=8,
linewidth=6,
label=label_pos)
axes.scatter(data[neg][:, 0], data[neg][:, 1], c='y', s=8, label=label_neg)
#显示x轴
axes.set_xlabel(label_x)
#显示y轴
axes.set_ylabel(label_y)
#显示标识位置
axes.legend(frameon=True, fancybox=True)
#axes.legend(loc='center left',bbox_to_anchor=(0.2,1.12),ncol=3)
if is_show:
show()
def axis_ij(g=None):
if g is None:
g = _plt.gca()
bottom, top = g.get_ylim()
if top>bottom:
g.set_ylim(top, bottom)
else:
pass
def axis_ij(g=None):
if g is None:
g = _plt.gca()
bottom, top = g.get_ylim()
if top > bottom:
g.set_ylim(top, bottom)
else:
pass
def plot_data(data, label_x, label_y):
axes = plt.gca()
axes.scatter(data[:, 2], data[:, 0], marker='+', c='k', s=8)
axes.scatter(data[:, 2], data[:, 1], c='y', s=8)
axes.set_xlabel(label_x)
axes.set_ylabel(label_y)
axes.legend(frameon=True, fancybox=True)
show()
def show_data(list_dat, num=4):
from pylab import plt
for dat in np.random.choice(list_dat, num):
print dat
im=cv2.imread(dat['filepath'])[:,:,::-1]
plt.figure(1)
plt.imshow(im)
for bbox in dat['bboxes']:
plt.gca().add_patch(plt.Rectangle((bbox['x1'], bbox['y1']),
bbox['x2'] - bbox['x1'],
bbox['y2'] - bbox['y1'], fill=False,
edgecolor='red', linewidth=1) )
for idx, bbox in enumerate(dat['bboxes']):
ann = np.array(Image.open(bbox['ann_path']))
if len(ann.shape)==3: ann = ann[:,:,0] # Make sure ann is a two dimensional np array.
plt.figure(11+idx)
plt.imshow(ann)
plt.show()
def _plot_base(dep, val, deplim_small, xlim_small, xlabel):
plt.subplot(1,2,1)
plt.plot(val, dep)
plt.gca().invert_yaxis()
plt.grid('on')
plt.ylabel('depth/km')
plt.xlabel(xlabel)
locs, labels = plt.xticks()
plt.setp(labels, rotation=-45)
plt.subplot(1,2,2)
plt.plot(val, dep)
plt.gca().invert_yaxis()
plt.grid('on')
plt.ylim(deplim_small)
plt.xlim(xlim_small)
plt.xlabel(xlabel)
locs, labels = plt.xticks()
plt.setp(labels, rotation=-45)
def _plot_base(dep, val, deplim_small, xlim_small, xlabel):
plt.subplot(1, 2, 1)
plt.plot(val, dep)
plt.gca().invert_yaxis()
plt.grid('on')
plt.ylabel('depth/km')
plt.xlabel(xlabel)
locs, labels = plt.xticks()
plt.setp(labels, rotation=-45)
plt.subplot(1, 2, 2)
plt.plot(val, dep)
plt.gca().invert_yaxis()
plt.grid('on')
plt.ylim(deplim_small)
plt.xlim(xlim_small)
plt.xlabel(xlabel)
locs, labels = plt.xticks()
plt.setp(labels, rotation=-45)
def show_prediction_result(image, label_image, clf):
size = (8, 8)
plt.figure(figsize=(15, 10))
plt.imshow(image, cmap='gray_r')
candidates = []
predictions = []
for region in regionprops(label_image):
# skip small images
# if region.area < 100:
# continue
# draw rectangle around segmented coins
minr, minc, maxr, maxc = region.bbox
# make regions square
maxwidth = np.max([maxr - minr, maxc - minc])
minr, maxr = int(0.5 * ((maxr + minr) - maxwidth)) - 3, int(0.5 * ((maxr + minr) + maxwidth)) + 3
minc, maxc = int(0.5 * ((maxc + minc) - maxwidth)) - 3, int(0.5 * ((maxc + minc) + maxwidth)) + 3
rect = mpatches.Rectangle((minc, minr), maxc - minc, maxr - minr,
fill=False, edgecolor='red', linewidth=2, alpha=0.2)
plt.gca().add_patch(rect)
# predict digit
candidate = image[minr:maxr, minc:maxc]
candidate = np.array(imresize(candidate, size), dtype=float)
# invert
# candidate = np.max(candidate) - candidate
# print im
# rescale to 16 in integer
candidate = (candidate - np.min(candidate))
if np.max(candidate) == 0:
continue
candidate /= np.max(candidate)
candidate[candidate < 0.2] = 0.0
candidate *= 16
candidate = np.array(candidate, dtype=int)
prediction = clf.predict(candidate.reshape(-1))
candidates.append(candidate)
predictions.append(prediction)
plt.text(minc - 10, minr - 10, "{}".format(prediction), fontsize=50)
plt.xticks([], [])
plt.yticks([], [])
plt.tight_layout()
plt.show()
return candidates, predictions
def draw_satTrail_multicolor(lons, lats, colormap, Trail_Width=1):
'''
画卫星轨迹，根据colormap使颜色渐变
'''
t = np.linspace(0, len(lons), len(lons))
lons_tmp = []
lats_tmp = []
lon_old = lons[0]
ti = 0
for i in xrange(len(lons)):
if abs(lons[i] - lon_old) >= 180.: # 轨迹每次过精度180，就分割画一次
points = np.array([lons_tmp, lats_tmp]).T.reshape(-1, 1, 2)
segments = np.concatenate([points[:-1], points[1:]], axis=1)
lc = LineCollection(
segments,
cmap=plt.get_cmap(colormap), # YlGnBu
norm=plt.Normalize(0, len(lons)))
lc.set_array(t[ti:i])
lc.set_linewidth(Trail_Width)
plt.gca().add_collection(lc)
# plt.plot(lons_tmp, lats_tmp, '-', linewidth=Trail_Width, c=color)
lons_tmp = []
lats_tmp = []
ti = i
lon_old = lons[i]
lons_tmp.append(lons[i])
lats_tmp.append(lats[i])
# plt.plot(lons_tmp, lats_tmp, '-', linewidth=Trail_Width, c=color)
points = np.array([lons_tmp, lats_tmp]).T.reshape(-1, 1, 2)
segments = np.concatenate([points[:-1], points[1:]], axis=1)
lc = LineCollection(
segments,
cmap=plt.get_cmap(colormap), # YlGnBu
norm=plt.Normalize(0, len(lons)))
lc.set_array(t[ti:i])
lc.set_linewidth(Trail_Width)
plt.gca().add_collection(lc)
def show_prediction_result(image, label_image, clf):
size = (8, 8)
plt.figure(figsize=(15, 10))
plt.imshow(image, cmap='gray_r')
candidates = []
predictions = []
for region in regionprops(label_image):
# skip small images
# if region.area < 100:
# continue
# draw rectangle around segmented coins
minr, minc, maxr, maxc = region.bbox
# make regions square
maxwidth = np.max([maxr - minr, maxc - minc])
minr, maxr = int(0.5 * ((maxr + minr) - maxwidth)) - 3, int(0.5 * ((maxr + minr) + maxwidth)) + 3
minc, maxc = int(0.5 * ((maxc + minc) - maxwidth)) - 3, int(0.5 * ((maxc + minc) + maxwidth)) + 3
rect = mpatches.Rectangle((minc, minr), maxc - minc, maxr - minr,
fill=False, edgecolor='red', linewidth=2, alpha=0.2)
plt.gca().add_patch(rect)
# predict digit
candidate = image[minr:maxr, minc:maxc]
candidate = np.array(imresize(candidate, size), dtype=float)
# invert
# candidate = np.max(candidate) - candidate
# print im
# rescale to 16 in integer
candidate = (candidate - np.min(candidate))
if np.max(candidate) == 0:
continue
candidate /= np.max(candidate)
candidate[candidate < 0.2] = 0.0
candidate *= 16
candidate = np.array(candidate, dtype=int)
prediction = clf.predict(candidate.reshape(-1))
candidates.append(candidate)
predictions.append(prediction)
plt.text(minc - 10, minr - 10, "{}".format(prediction), fontsize=50)
plt.xticks([], [])
plt.yticks([], [])
plt.tight_layout()
plt.show()
return candidates, predictions
def show_data(list_dat, num=4):
from pylab import plt
for dat in np.random.choice(list_dat, num):
print dat
im = cv2.imread(dat['filepath'])[:, :, ::-1]
plt.figure(1)
plt.imshow(im)
for bbox in dat['bboxes']:
plt.gca().add_patch(
plt.Rectangle((bbox['x1'], bbox['y1']),
bbox['x2'] - bbox['x1'],
bbox['y2'] - bbox['y1'],
fill=False,
edgecolor='red',
linewidth=1))
for idx, bbox in enumerate(dat['bboxes']):
ann = cv2.imread(bbox['ann_path'], cv2.IMREAD_GRAYSCALE)
plt.figure(11 + idx)
plt.imshow(ann)
plt.show()
def draw_spectrum(data_list):
T = 3600
amp_spec, power_spec, freq = spectrum(data_list, T)
print('Max amp in spectrum: {np.max(amp_spec)}')
plt.figure(figsize=(18, 5))
plt.subplot(131)
x = list(range(len(data_list)))
y = data_list
plt.title("Observation wind data of Kyoto")
plt.xlabel('Hours')
plt.ylabel('Observation wind data of Kyoto')
plt.plot(x, y, color='green')
data_len = len(x)
plt.subplot(132)
plt.title("Power Spectrum of Wind ")
x = freq[int(data_len / 2):]
y = power_spec[int(data_len / 2):]
# set 0 to 0Hz (DC component)
y[0] = 0
plt.xlabel('Frequency (Hz)')
plt.ylabel('Intensity')
plt.plot(x, y, color='orange')
ax = plt.gca()
x = x[1:]
y = y[1:]
ax.xaxis.set_major_formatter(mtick.FormatStrFormatter('%.0e'))
coeffs = np.polyfit(np.log(x), np.log(y), 1)
beta = -coeffs[0]
dimension = 1 + (3 - beta) / 2
print(beta)
print("The fractal dimension is", dimension)
plt.subplot(133)
plt.title("the Curve of log(power-spectrum) and log(frequency)")
plt.scatter(np.log(x), np.log(y), marker='o', s=10, c=list(range(len(x))))
# plt.plot(np.log(x), np.log(y), 'o', mfc='none')
plt.plot(np.log(x), np.polyval(coeffs, np.log(x)))
plt.xlabel('log freq')
plt.ylabel('log intensity')
plt.savefig("../pics/kyoto_wind.png")
plt.show()
def plot(self):
fig = plt.figure(figsize=self.figsize)
fig.patch.set_facecolor('white')
fig.patch.set_alpha(0)
ax = plt.gca()
ax.set_title("Choices \n", fontsize=self.title_size)
labels = [
"Choice 0 -> 1",
"Choice 1 -> 0",
"Choice 1 -> 2",
"Choice 2 -> 1",
"Choice 2 -> 0",
"Choice 0 -> 2",
]
line_styles = ["-", "-", "-", "-", "-", "-"]
markers = [4, 5, 4, 5, 4, 5]
colors = ["red", "red", "blue", "blue", "green", "green"]
for i, y in enumerate(self.Ys):
ax.plot(self.X,
y,
label=labels[i],
linewidth=self.line_width,
color=colors[i],
linestyle=line_styles[i],
marker=markers[i])
ax.legend(bbox_to_anchor=(0.95, 1.19),
loc=2,
fontsize=self.legend_font_size,
frameon=False)
ax.tick_params(axis='both',
which='major',
labelsize=self.label_value_size)
ax.set_xlabel("t", fontsize=self.label_font_size)
ax.set_ylabel("n", fontsize=self.label_font_size)
ax.spines['right'].set_color('none')
ax.yaxis.set_ticks_position('left')
ax.xaxis.set_ticks_position('bottom')
ax.spines['top'].set_color('none')
plt.savefig(self.fig_name)
plt.close()
def plot(self):
fig = plt.figure(figsize=self.figsize)
fig.patch.set_facecolor('white')
# fig.patch.set_alpha(0)
ax = plt.gca()
ax.set_title("Rewards distribution\n", fontsize=self.title_size)
ax.bar(self.X, self.Y, self.bar_width, tick_label=self.X, color="grey")
ax.tick_params(axis='both',
which='major',
labelsize=self.label_value_size)
plt.savefig(self.fig_name)
plt.close()
def plot(self):
fig = plt.figure(figsize=self.figsize)
fig.patch.set_facecolor('white')
# fig.patch.set_alpha(0)
ax = plt.gca()
ax.set_title("Markets attendance \n", fontsize=self.title_size)
labels = [
"Market 0 -> 1 / 1 -> 0",
"Market 1 -> 2 / 2 -> 1",
"Market 2 -> 0 / 0 -> 2",
]
line_styles = ["-", "--", ":"]
for i, y in enumerate(self.Ys):
ax.plot(self.X,
y,
label=labels[i],
linewidth=self.line_width,
color="black",
linestyle=line_styles[i])
ax.legend(bbox_to_anchor=(0.8, 1.19),
loc=2,
fontsize=self.legend_font_size,
frameon=False)
ax.tick_params(axis='both',
which='major',
labelsize=self.label_value_size)
ax.set_xlabel("t", fontsize=self.label_font_size)
ax.set_ylabel("n", fontsize=self.label_font_size)
ax.spines['right'].set_color('none')
ax.yaxis.set_ticks_position('left')
ax.xaxis.set_ticks_position('bottom')
ax.spines['top'].set_color('none')
plt.savefig(self.fig_name)
plt.close()
def plot_fault_framework(fault_framework):
fm = fault_framework
plt.plot(fm.Y_PC, fm.DEP, '-o')
plt.axis('equal')
plt.axhline(0, color='black')
plt.gca().set_yticks(fm.DEP)
plt.gca().set_xticks(fm.Y_PC)
plt.grid('on')
plt.xlabel('From trench to continent(km)')
plt.ylabel('depth (km)')
for xi, yi, dip in zip(fm.Y_PC, fm.DEP, fm.DIP_D):
plt.text(xi, yi, 'dip = %.1f' % dip)
plt.gca().invert_yaxis()
def plot_fault_framework(fault_framework):
fm = fault_framework
plt.plot(fm.Y_PC, fm.DEP, '-o')
plt.axis('equal')
plt.axhline(0, color='black')
plt.gca().set_yticks(fm.DEP)
plt.gca().set_xticks(fm.Y_PC)
plt.grid('on')
plt.xlabel('From trench to continent(km)')
plt.ylabel('depth (km)')
for xi, yi, dip in zip(fm.Y_PC, fm.DEP, fm.DIP_D):
plt.text(xi, yi, 'dip = %.1f'%dip)
plt.gca().invert_yaxis()
def plotNet(net, colors, widths, options):
shapes = []
c = []
w = []
for e in net._edges:
shapes.append(e.getShape())
if e._id in colors:
c.append(colors[str(e._id)])
else:
c.append(options.defaultColor)
if e._id in widths:
w.append(widths[str(e._id)])
else:
w.append(options.defaultWidth)
line_segments = LineCollection(shapes, linewidths=w, colors=c)
ax = plt.gca()
ax.add_collection(line_segments)
ax.set_xmargin(0.1)
ax.set_ymargin(0.1)
ax.autoscale_view(True, True, True)
def plot_L_curve(
files,
nlin_pars=['log10_He_', 'log10_visM_', 'rake'],
nlin_pars_ylabels=[r'$log_{10}(He)$', r'$log_{10}(visM)$', 'rake'],
):
nreses = collect_from_result_files(files, 'residual_norm_weighted')
nroughs = collect_from_result_files(files, 'roughening_norm')
num_subplots = 1 + len(nlin_pars)
x1 = amin(nreses)
x2 = amax(nreses)
dx = x2 - x1
xlim = (x1 - dx * 0.02, x2 + dx * 0.2)
xticks = range(int(x1), int(x2), 5)
plt.subplot(num_subplots, 1, 1)
plt.loglog(nreses, nroughs, 'o-')
plt.xlim(xlim)
plt.gca().set_xticks(xticks)
plt.gca().get_xaxis().set_major_formatter(
matplotlib.ticker.ScalarFormatter())
plt.ylabel('roughening')
plt.xlabel('Residual Norm')
plt.grid('on')
nth = 2
for par, par_label in zip(nlin_pars, nlin_pars_ylabels):
y = collect_from_result_files(files, par)
plt.subplot(num_subplots, 1, nth)
plt.semilogx(nreses, y, 'o-')
plt.xlim(xlim)
plt.gca().set_xticks(xticks)
plt.gca().get_xaxis().set_major_formatter(
matplotlib.ticker.ScalarFormatter())
plt.ylabel(par_label)
plt.xlabel('Residual Norm')
plt.grid('on')
nth += 1
def plotNet(net, colors, widths, options):
shapes = []
c = []
w = []
for e in net._edges:
shapes.append(e.getShape())
if e._id in colors:
c.append(colors[str(e._id)])
else:
c.append(options.defaultColor)
if e._id in widths:
w.append(widths[str(e._id)])
else:
w.append(options.defaultWidth)
line_segments = LineCollection(shapes, linewidths=w, colors=c)
ax = plt.gca()
ax.add_collection(line_segments)
ax.set_xmargin(0.1)
ax.set_ymargin(0.1)
ax.autoscale_view(True, True, True)
def test_dep(self):
xf = arange(0, 425)
deps = self.fm.get_dep(xf)
plt.plot(xf, deps)
plt.gca().set_yticks(self.fm.DEP)
plt.gca().set_xticks(self.fm.Y_PC)
plt.grid('on')
plt.title('Ground x versus depth')
plt.xlabel('Ground X (km)')
plt.ylabel('depth (km)')
plt.axis('equal')
plt.gca().invert_yaxis()
plt.savefig(join(self.outs_dir, '~Y_PC_vs_deps.png'))
plt.close()
def test_dep(self):
xf = arange(0, 425)
deps = self.fm.get_dep(xf)
plt.plot(xf,deps)
plt.gca().set_yticks(self.fm.DEP)
plt.gca().set_xticks(self.fm.Y_PC)
plt.grid('on')
plt.title('Ground x versus depth')
plt.xlabel('Ground X (km)')
plt.ylabel('depth (km)')
plt.axis('equal')
plt.gca().invert_yaxis()
plt.savefig(join(self.outs_dir, '~Y_PC_vs_deps.png'))
plt.close()
def plot_L_curve(files,
nlin_pars = ['log10_He_','log10_visM_','rake'],
nlin_pars_ylabels = [r'$log_{10}(He)$',
r'$log_{10}(visM)$',
'rake'],
):
nreses = collect_from_result_files(files, 'residual_norm_weighted')
nroughs = collect_from_result_files(files, 'roughening_norm')
num_subplots = 1 + len(nlin_pars)
x1 = amin(nreses)
x2 = amax(nreses)
dx = x2 - x1
xlim = (x1-dx*0.02, x2+dx*0.2)
xticks = range(int(x1), int(x2),5)
plt.subplot(num_subplots,1,1)
plt.loglog(nreses, nroughs,'o-')
plt.xlim(xlim)
plt.gca().set_xticks(xticks)
plt.gca().get_xaxis().set_major_formatter(matplotlib.ticker.ScalarFormatter())
plt.ylabel('roughening')
plt.xlabel('Residual Norm')
plt.grid('on')
nth = 2
for par, par_label in zip(nlin_pars, nlin_pars_ylabels):
y = collect_from_result_files(files, par)
plt.subplot(num_subplots,1,nth)
plt.semilogx(nreses, y,'o-')
plt.xlim(xlim)
plt.gca().set_xticks(xticks)
plt.gca().get_xaxis().set_major_formatter(matplotlib.ticker.ScalarFormatter())
plt.ylabel(par_label)
plt.xlabel('Residual Norm')
plt.grid('on')
nth += 1
def show(filename=None, labels=False):
if not labels:
# fix everything if in 3D mode
plt.subplots_adjust(left=0.0, right=1.1, bottom=0.0, top=1.0)
# also do this if in 2d mode
if not is_3d:
frame1 = plt.gca()
frame1.axes.get_xaxis().set_visible(False)
frame1.axes.get_yaxis().set_visible(False)
if legend:
plt.legend(loc="upper left", fontsize=8, prop={'family': "Monaco", 'weight': "roman", 'size': "x-small"})
if filename is not None:
if '.' not in filename:
if not os.path.isdir(filename):
os.makedirs(filename)
filename = os.path.abspath(os.path.join(filename, "%s.png" % util.timestamp()))
figure.savefig(filename, dpi=150, facecolor=figure.get_facecolor(), edgecolor='none')
plt.show()
def plot(self):
fig = plt.figure(figsize=self.figsize)
fig.patch.set_facecolor('white')
fig.patch.set_alpha(0)
ax = plt.gca()
ax.set_title("Consumption\n", fontsize=self.title_size)
ax.plot(self.X, self.Y, linewidth=self.line_width, color="black")
ax.tick_params(axis='both',
which='major',
labelsize=self.label_value_size)
ax.set_xlabel("t", fontsize=self.label_font_size)
ax.set_ylabel("n", fontsize=self.label_font_size)
ax.spines['right'].set_color('none')
ax.yaxis.set_ticks_position('left')
ax.xaxis.set_ticks_position('bottom')
ax.spines['top'].set_color('none')
plt.savefig(self.fig_name)
plt.close()
sites = [ii[0] for ii in tp]
disp0 = np.asarray([ii[1] for ii in tp]).flatten()
us0 = disp0[2::3]
ep = vj.EpochalDisplacement('cumu_post_with_seafloor.h5', filter_sites=sites)
disp1 = ep[0]
us1 = disp1[2::3]
plt.subplot(121)
bm = vj.MyBasemap(region_code='near')
mplt = vj.MapPlotDisplacement(basemap=bm)
mplt.plot_scalor(us0, sites, cmap='RdBu')
mplt = vj.MapPlotSlab(basemap=bm)
mplt.plot_top()
plt.clim([-1., 1.])
plt.subplot(122)
bm = vj.MyBasemap(region_code='near')
mplt = vj.MapPlotDisplacement(basemap=bm)
im = mplt.plot_scalor(us1, sites, cmap='RdBu')
mplt = vj.MapPlotSlab(basemap=bm)
mplt.plot_top()
plt.clim([-1., 1.])
divider = make_axes_locatable(plt.gca())
cax = divider.append_axes("right", size="5%", pad=0.05)
plt.colorbar(im, cax=cax)
plt.savefig('compare.pdf')
plt.show()
def show_chan_mpl(code,
start_date,
end_date,
stock_days,
resample,
show_mpl=True,
least_init=3,
chanK_flag=False,
windows=20):
def get_least_khl_num(resample, idx=0, init_num=3):
# init = 3
if init_num - idx > 0:
initw = init_num - idx
else:
initw = 0
return init_num if resample == 'd' else initw if resample == 'w' else init_num-idx-1 if init_num-idx-1 >0 else 0\
if resample == 'm' else 5
stock_code = code # 股票代码
# stock_code = '002176' # 股票代码
# start_date = '2017-09-05'
# start_date = None
# end_date = '2017-10-12 15:00:00' # 最后生成k线日期
# end_date = None
# stock_days = 60 # 看几天/分钟前的k线
# resample = 'd'
# resample = 'w'
x_jizhun = 3 # window 周期 x轴展示的时间距离 5：日，40:30分钟， 48： 5分钟
least_khl_num = get_least_khl_num(resample, init_num=least_init)
# stock_frequency = '5m' # 1d日线， 30m 30分钟， 5m 5分钟，1m 1分钟
stock_frequency = resample # 1d日线， 30m 30分钟， 5m 5分钟，1m 1分钟 w:week
# chanK_flag = chanK # True 看缠论K线， False 看k线
# chanK_flag = True # True 看缠论K线， False 看k线
show_mpl = show_mpl
def con2Cxianduan(stock,
k_data,
chanK,
frsBiType,
biIdx,
end_date,
cur_ji=1,
recursion=False,
dl=None,
chanK_flag=False,
least_init=3):
max_k_num = 4
if cur_ji >= 6 or len(biIdx) == 0 or recursion:
return biIdx
idx = biIdx[len(biIdx) - 1]
k_data_dts = list(k_data.index)
st_data = chanK['enddate'][idx]
if st_data not in k_data_dts:
return biIdx
# 重构次级别线段的点到本级别的chanK中
def refactorXd(biIdx, xdIdxc, chanK, chanKc, cur_ji):
new_biIdx = []
biIdxB = biIdx[len(biIdx) - 1] if len(biIdx) > 0 else 0
for xdIdxcn in xdIdxc:
for chanKidx in range(len(chanK.index))[biIdxB:]:
if judge_day_bao(chanK, chanKidx, chanKc, xdIdxcn, cur_ji):
new_biIdx.append(chanKidx)
break
return new_biIdx
# 判断次级别日期是否被包含
def judge_day_bao(chanK, chanKidx, chanKc, xdIdxcn, cur_ji):
_end_date = chanK['enddate'][chanKidx] + datetime.timedelta(
hours=15) if cur_ji == 1 else chanK['enddate'][chanKidx]
_start_date = chanK.index[chanKidx] if chanKidx == 0\
else chanK['enddate'][chanKidx - 1] + datetime.timedelta(minutes=1)
return _start_date <= chanKc.index[xdIdxcn] <= _end_date
# cur_ji = 1 #当前级别
# 符合k线根数大于4根 1日级别， 2 30分钟， 3 5分钟， 4 一分钟
if not recursion:
resample = 'd' if cur_ji + 1 == 2 else '5m' if cur_ji + 1 == 3 else \
'd' if cur_ji + 1 == 5 else 'w' if cur_ji + 1 == 6 else 'd'
least_khl_num = get_least_khl_num(resample, 1, init_num=least_init)
print "次级:%s st_data:%s k_data_dts:%s least_khl_num:%s" % (
len(k_data_dts) - k_data_dts.index(st_data), str(st_data)[:10],
len(k_data_dts), least_khl_num)
if cur_ji + 1 != 2 and len(k_data_dts) - k_data_dts.index(
st_data) >= least_khl_num + 1:
frequency = '30m' if cur_ji + 1 == 2 else '5m' if cur_ji + 1 == 3 else '1m'
# else:
# frequency = 'd' if cur_ji+1==2 else '5m' if cur_ji+1==3 else \
# 'd' if cur_ji+1==5 else 'w' if cur_ji+1==6 else 'd'
start_lastday = str(chanK.index[biIdx[-1]])[0:10]
print "次级别为:%s cur_ji:%s %s" % (resample, cur_ji, start_lastday)
# print [chanK.index[x] for x in biIdx]
k_data_c, cname = get_quotes_tdx(stock,
start=start_lastday,
end=end_date,
dl=dl,
resample=resample)
print k_data_c.index[0], k_data_c.index[-1]
chanKc = chan.parse2ChanK(
k_data_c, k_data_c.values) if chanK_flag else k_data_c
fenTypesc, fenIdxc = chan.parse2ChanFen(chanKc, recursion=True)
if len(fenTypesc) == 0:
return biIdx
biIdxc, frsBiTypec = chan.parse2ChanBi(
fenTypesc, fenIdxc, chanKc, least_khl_num=least_khl_num - 1)
if len(biIdxc) == 0:
return biIdx
print "biIdxc:", [round(k_data_c.high[x], 2) for x in biIdxc
], [str(k_data_c.index[x])[:10] for x in biIdxc]
xdIdxc, xdTypec = chan.parse2Xianduan(
biIdxc, chanKc, least_windows=1 if least_khl_num > 0 else 0)
biIdxc = con2Cxianduan(stock,
k_data_c,
chanKc,
frsBiTypec,
biIdxc,
end_date,
cur_ji + 1,
recursion=True)
print "xdIdxc:%s xdTypec:%s biIdxc:%s" % (xdIdxc, xdTypec, biIdxc)
if len(xdIdxc) == 0:
return biIdx
# 连接线段位为上级别的bi
lastBiType = frsBiType if len(biIdx) % 2 == 0 else -frsBiType
if len(biIdx) == 0:
return refactorXd(biIdx, xdIdxc, chanK, chanKc, cur_ji)
lastbi = biIdx.pop()
firstbic = xdIdxc.pop(0)
# 同向连接
if lastBiType == xdTypec:
biIdx = biIdx + refactorXd(biIdx, xdIdxc, chanK, chanKc,
cur_ji)
# 逆向连接
else:
# print '开始逆向连接'
_mid = [lastbi] if (lastBiType == -1 and chanK['low'][lastbi] <= chanKc['low'][firstbic])\
or (lastBiType == 1 and chanK['high'][lastbi] >= chanKc['high'][firstbic]) else\
[chanKidx for chanKidx in range(len(chanK.index))[biIdx[len(biIdx) - 1]:]
if judge_day_bao(chanK, chanKidx, chanKc, firstbic, cur_ji)]
biIdx = biIdx + [_mid[0]] + refactorXd(biIdx, xdIdxc, chanK,
chanKc, cur_ji)
# print "次级:",len(biIdx),biIdx,[str(k_data_c.index[x])[:10] for x in biIdx]
return biIdx
def get_quotes_tdx(code,
start=None,
end=None,
dl=120,
resample='d',
show_name=True):
quotes = tdd.get_tdx_append_now_df_api(
code=stock_code, start=start, end=end,
dl=dl).sort_index(ascending=True)
if not resample == 'd' and resample in tdd.resample_dtype:
quotes = tdd.get_tdx_stock_period_to_type(quotes,
period_day=resample)
quotes.index = quotes.index.astype('datetime64')
if show_name:
if 'name' in quotes.columns:
cname = quotes.name[0]
# cname_g =cname
else:
dm = tdd.get_sina_data_df(code)
if 'name' in dm.columns:
cname = dm.name[0]
else:
cname = '-'
else:
cname = '-'
if quotes is not None and len(quotes) > 0:
quotes = quotes.loc[:, [
'open', 'close', 'high', 'low', 'vol', 'amount'
]]
else:
# log.error("quotes is None check:%s"%(code))
raise Exception("Code:%s error, df is None%s" % (code))
return quotes, cname
quotes, cname = get_quotes_tdx(stock_code,
start_date,
end_date,
dl=stock_days,
resample=resample,
show_name=show_mpl)
# quotes.rename(columns={'amount': 'money'}, inplace=True)
# quotes.rename(columns={'vol': 'vol'}, inplace=True)
# print quotes[-2:]
# print quotes[:1]
# 缠论k线
# open close high low volume money
# 2017-05-03 15.69 15.66 15.73 15.53 10557743 165075887
# 2017-05-04 15.66 15.63 15.70 15.52 8343270 130330396
# 2017-05-05 15.56 15.65 15.68 15.41 18384031 285966842
# 2017-05-08 15.62 15.75 15.76 15.54 12598891 197310688
quotes = chan.parse2ChanK(quotes, quotes.values) if chanK_flag else quotes
# print quotes[:1].index
# print quotes[-1:].index
quotes[quotes['vol'] == 0] = np.nan
quotes = quotes.dropna()
Close = quotes['close']
Open = quotes['open']
High = quotes['high']
Low = quotes['low']
T0 = quotes.index.values
# T0 = mdates.date2num(T0)
length = len(Close)
initial_trend = "down"
cur_ji = 1 if stock_frequency == 'd' else \
2 if stock_frequency == '30m' else \
3 if stock_frequency == '5m' else \
4 if stock_frequency == 'w' else \
5 if stock_frequency == 'm' else 6
log.debug('======笔形成最后一段未完成段判断是否是次级别的走势形成笔=======:%s %s' %
(stock_frequency, cur_ji))
x_date_list = quotes.index.values.tolist()
# for x_date in x_date_list:
# d = datetime.datetime.fromtimestamp(x_date/1000000000)
# print d.strftime("%Y-%m-%d %H:%M:%S.%f")
# print x_date_list
k_data = quotes
k_values = k_data.values
# 缠论k线
chanK = quotes if chanK_flag else chan.parse2ChanK(
k_data, k_values, chan_kdf=chanK_flag)
fenTypes, fenIdx = chan.parse2ChanFen(chanK)
# log.debug("code:%s fenTypes:%s fenIdx:%s k_data:%s" % (stock_code,fenTypes, fenIdx, len(k_data)))
biIdx, frsBiType = chan.parse2ChanBi(fenTypes,
fenIdx,
chanK,
least_khl_num=least_khl_num)
# log.debug("biIdx1:%s chanK:%s" % (biIdx, len(chanK)))
print("biIdx1:%s %s chanK:%s" %
(biIdx, str(chanK.index.values[biIdx[-1]])[:10], len(chanK)))
biIdx = con2Cxianduan(stock_code,
k_data,
chanK,
frsBiType,
biIdx,
end_date,
cur_ji,
least_init=least_init)
# log.debug("biIdx2:%s chanK:%s" % (biIdx, len(biIdx)))
chanKIdx = [(chanK.index[x]) for x in biIdx]
if len(biIdx) == 0 and len(chanKIdx) == 0:
print "BiIdx is None and chanKidx is None:%s" % (code)
return None
log.debug("con2Cxianduan:%s chanK:%s %s" %
(biIdx, len(chanK), chanKIdx[-1] if len(chanKIdx) > 0 else None))
# print quotes['close'].apply(lambda x:round(x,2))
# print '股票代码', get_security_info(stock_code).display_name
# print '股票代码', (stock_code), resample, least_khl_num
# 3.得到分笔结果，计算坐标显示
def plot_fenbi_seq(biIdx, frsBiType, plt=None, color=None):
x_fenbi_seq = []
y_fenbi_seq = []
for i in range(len(biIdx)):
if biIdx[i] is not None:
fenType = -frsBiType if i % 2 == 0 else frsBiType
# dt = chanK['enddate'][biIdx[i]]
# 缠论k线
dt = chanK.index[biIdx[i]] if chanK_flag else chanK['enddate'][
biIdx[i]]
# print i,k_data['high'][dt], k_data['low'][dt]
time_long = long(
time.mktime(
(dt + datetime.timedelta(hours=8)).timetuple()) *
1000000000)
# print x_date_list.index(time_long) if time_long in x_date_list else 0
if fenType == 1:
if plt is not None:
if color is None:
plt.text(x_date_list.index(time_long),
k_data['high'][dt],
str(k_data['high'][dt]),
ha='left',
fontsize=12)
else:
col_v = color[0] if fenType > 0 else color[1]
plt.text(x_date_list.index(time_long),
k_data['high'][dt],
str(k_data['high'][dt]),
ha='left',
fontsize=12,
bbox=dict(facecolor=col_v, alpha=0.5))
x_fenbi_seq.append(x_date_list.index(time_long))
y_fenbi_seq.append(k_data['high'][dt])
if fenType == -1:
if plt is not None:
if color is None:
plt.text(x_date_list.index(time_long),
k_data['low'][dt],
str(k_data['low'][dt]),
va='bottom',
fontsize=12)
else:
col_v = color[0] if fenType > 0 else color[1]
plt.text(x_date_list.index(time_long),
k_data['low'][dt],
str(k_data['low'][dt]),
va='bottom',
fontsize=12,
bbox=dict(facecolor=col_v, alpha=0.5))
x_fenbi_seq.append(x_date_list.index(time_long))
y_fenbi_seq.append(k_data['low'][dt])
# bottom_time = None
# for k_line_dto in m_line_dto.member_list[::-1]:
# if k_line_dto.low == m_line_dto.low:
# # get_price返回的日期，默认时间是08:00:00
# bottom_time = k_line_dto.begin_time.strftime('%Y-%m-%d') +' 08:00:00'
# break
# x_fenbi_seq.append(x_date_list.index(long(time.mktime(datetime.strptime(bottom_time, "%Y-%m-%d %H:%M:%S").timetuple())*1000000000)))
# y_fenbi_seq.append(m_line_dto.low)
return x_fenbi_seq, y_fenbi_seq
# print T0[-len(T0):].astype(dt.date)
T1 = T0[-len(T0):].astype(datetime.date) / 1000000000
Ti = []
if len(T0) / x_jizhun > 12:
x_jizhun = len(T0) / 12
for i in range(len(T0) / x_jizhun):
# print "len(T0)/x_jizhun:",len(T0)/x_jizhun
a = i * x_jizhun
d = datetime.date.fromtimestamp(T1[a])
# print d
T2 = d.strftime('$%Y-%m-%d$')
Ti.append(T2)
# print tab
d1 = datetime.date.fromtimestamp(T1[len(T0) - 1])
d2 = (d1 + datetime.timedelta(days=1)).strftime('$%Y-%m-%d$')
Ti.append(d2)
ll = Low.min() * 0.97
hh = High.max() * 1.03
# ht = HoverTool(tooltips=[
# ("date", "@date"),
# ("open", "@open"),
# ("close", "@close"),
# ("high", "@high"),
# ("low", "@low"),
# ("volume", "@volume"),
# ("money", "@money"),])
# TOOLS = [ht, WheelZoomTool(dimensions=['width']),\
# ResizeTool(), ResetTool(),\
# PanTool(dimensions=['width']), PreviewSaveTool()]
if show_mpl:
fig = plt.figure(figsize=(10, 6))
ax1 = plt.subplot2grid((10, 1), (0, 0), rowspan=8, colspan=1)
# ax1 = fig.add_subplot(2,1,1)
#fig = plt.figure()
#ax1 = plt.axes([0,0,3,2])
X = np.array(range(0, length))
pad_nan = X + nan
# 计算上 下影线
max_clop = Close.copy()
max_clop[Close < Open] = Open[Close < Open]
min_clop = Close.copy()
min_clop[Close > Open] = Open[Close > Open]
# 上影线
line_up = np.array([High, max_clop, pad_nan])
line_up = np.ravel(line_up, 'F')
# 下影线
line_down = np.array([Low, min_clop, pad_nan])
line_down = np.ravel(line_down, 'F')
# 计算上下影线对应的X坐标
pad_nan = nan + X
pad_X = np.array([X, X, X])
pad_X = np.ravel(pad_X, 'F')
# 画出实体部分,先画收盘价在上的部分
up_cl = Close.copy()
up_cl[Close <= Open] = nan
up_op = Open.copy()
up_op[Close <= Open] = nan
down_cl = Close.copy()
down_cl[Open <= Close] = nan
down_op = Open.copy()
down_op[Open <= Close] = nan
even = Close.copy()
even[Close != Open] = nan
# 画出收红的实体部分
pad_box_up = np.array([up_op, up_op, up_cl, up_cl, pad_nan])
pad_box_up = np.ravel(pad_box_up, 'F')
pad_box_down = np.array([down_cl, down_cl, down_op, down_op, pad_nan])
pad_box_down = np.ravel(pad_box_down, 'F')
pad_box_even = np.array([even, even, even, even, pad_nan])
pad_box_even = np.ravel(pad_box_even, 'F')
# X的nan可以不用与y一一对应
X_left = X - 0.25
X_right = X + 0.25
box_X = np.array([X_left, X_right, X_right, X_left, pad_nan])
# print box_X
box_X = np.ravel(box_X, 'F')
# print box_X
# Close_handle=plt.plot(pad_X,line_up,color='k')
vertices_up = np.array([box_X, pad_box_up]).T
vertices_down = np.array([box_X, pad_box_down]).T
vertices_even = np.array([box_X, pad_box_even]).T
handle_box_up = mat.patches.Polygon(vertices_up, color='r', zorder=1)
handle_box_down = mat.patches.Polygon(vertices_down,
color='g',
zorder=1)
handle_box_even = mat.patches.Polygon(vertices_even,
color='k',
zorder=1)
ax1.add_patch(handle_box_up)
ax1.add_patch(handle_box_down)
ax1.add_patch(handle_box_even)
handle_line_up = mat.lines.Line2D(pad_X,
line_up,
color='k',
linestyle='solid',
zorder=0)
handle_line_down = mat.lines.Line2D(pad_X,
line_down,
color='k',
linestyle='solid',
zorder=0)
ax1.add_line(handle_line_up)
ax1.add_line(handle_line_down)
v = [0, length, Open.min() - 0.5, Open.max() + 0.5]
plt.axis(v)
ax1.set_xticks(np.linspace(-2, len(Close) + 2, len(Ti)))
ax1.set_ylim(ll, hh)
ax1.set_xticklabels(Ti)
plt.grid(True)
plt.setp(plt.gca().get_xticklabels(),
rotation=30,
horizontalalignment='right')
'''
以上代码拷贝自https://www.joinquant.com/post/1756
感谢alpha-smart-dog
K线图绘制完毕
'''
# print "biIdx:%s chankIdx:%s"%(biIdx,str(chanKIdx[-1])[:10])
if show_mpl:
x_fenbi_seq, y_fenbi_seq = plot_fenbi_seq(biIdx, frsBiType, plt)
# plot_fenbi_seq(fenIdx,fenTypes[0], plt,color=['red','green'])
plot_fenbi_seq(fenIdx, frsBiType, plt, color=['red', 'green'])
else:
x_fenbi_seq, y_fenbi_seq = plot_fenbi_seq(biIdx, frsBiType, plt=None)
plot_fenbi_seq(fenIdx, frsBiType, plt=None, color=['red', 'green'])
# 在原图基础上添加分笔蓝线
inx_value = chanK.high.values
inx_va = [round(inx_value[x], 2) for x in biIdx]
log.debug("inx_va:%s count:%s" % (inx_va, len(quotes.high)))
log.debug("yfenbi:%s count:%s" % ([round(y, 2)
for y in y_fenbi_seq], len(chanK)))
j_BiType = [
-frsBiType if i % 2 == 0 else frsBiType for i in range(len(biIdx))
]
BiType_s = j_BiType[-1] if len(j_BiType) > 0 else -2
# bi_price = [str(chanK.low[idx]) if i % 2 == 0 else str(chanK.high[idx]) for i,idx in enumerate(biIdx)]
# print ("笔 :%s %s"%(biIdx,bi_price))
# fen_dt = [str(chanK.index[fenIdx[i]])[:10] if chanK_flag else str(chanK['enddate'][fenIdx[i]])[:10]for i in range(len(fenIdx))]
fen_dt = [(chanK.index[fenIdx[i]]) if chanK_flag else
(chanK['enddate'][fenIdx[i]]) for i in range(len(fenIdx))]
if len(fenTypes) > 0:
if fenTypes[0] == -1:
# fen_price = [str(k_data.low[idx]) if i % 2 == 0 else str(k_data.high[idx]) for i,idx in enumerate(fen_dt)]
low_fen = [idx for i, idx in enumerate(fen_dt) if i % 2 == 0]
high_fen = [idx for i, idx in enumerate(fen_dt) if i % 2 <> 0]
else:
# fen_price = [str(k_data.high[idx]) if i % 2 == 0 else str(k_data.low[idx]) for i,idx in enumerate(fen_dt)]
high_fen = [idx for i, idx in enumerate(fen_dt) if i % 2 == 0]
low_fen = [idx for i, idx in enumerate(fen_dt) if i % 2 <> 0]
# fen_duration =[fenIdx[i] - fenIdx[i -1 ] if i >0 else 0 for i,idx in enumerate(fenIdx)]
else:
# fen_price = fenTypes
# fen_duration = fenTypes
low_fen = []
high_fen = []
# fen_dt = [str(k_data.index[idx])[:10] for i,idx in enumerate(fenIdx)]
# print low_fen,high_fen
def dataframe_mode_round(df):
roundlist = [1, 0]
df_mode = []
# df.high.cummin().value_counts()
for i in roundlist:
df_mode = df.apply(lambda x: round(x, i)).mode()
if len(df_mode) > 0:
break
return df_mode
kdl = k_data.loc[low_fen].low
kdl_mode = dataframe_mode_round(kdl)
kdh = k_data.loc[high_fen].high
kdh_mode = dataframe_mode_round(kdh)
print("kdl:%s" % (kdl.values))
print("kdh:%s" % (kdh.values))
print("kdl_mode:%s kdh_mode%s chanKidx:%s" %
(kdl_mode.values, kdh_mode.values, str(chanKIdx[-1])[:10]))
lastdf = k_data[k_data.index >= chanKIdx[-1]]
if BiType_s == -1:
keydf = lastdf[((lastdf.close >= kdl_mode.max()) &
(lastdf.low >= kdl_mode.max()))]
elif BiType_s == 1:
keydf = lastdf[((lastdf.close >= kdh_mode.max()) &
(lastdf.high >= kdh_mode.min()))]
else:
keydf = lastdf[((lastdf.close >= kdh_mode.max()) &
(lastdf.high >= kdh_mode.min())) |
((lastdf.close <= kdl_mode.min()) &
(lastdf.low <= kdl_mode.min()))]
print("BiType_s:%s keydf:%s key:%s" %
(BiType_s, None if len(keydf) == 0 else str(
keydf.index.values[0])[:10], len(keydf)))
# return BiType_s,None if len(keydf) == 0 else str(keydf.index.values[0])[:10],len(keydf)
# import ipdb;ipdb.set_trace()
log.debug("Fentype:%s " % (fenTypes))
log.debug("fenIdx:%s " % (fenIdx))
# print ("fen_duration:%s "%(fen_duration))
# print ("fen_price:%s "%(fen_price))
# print ("fendt:%s "%(fen_dt))
print("BiType :%s frsBiType:%s" % (j_BiType, frsBiType))
if len(j_BiType) > 0:
if j_BiType[0] == -1:
tb_price = [
str(quotes.low[idx]) if i % 2 == 0 else str(quotes.high[idx])
for i, idx in enumerate(x_fenbi_seq)
]
else:
tb_price = [
str(quotes.high[idx]) if i % 2 == 0 else str(quotes.low[idx])
for i, idx in enumerate(x_fenbi_seq)
]
tb_duration = [
x_fenbi_seq[i] - x_fenbi_seq[i - 1] if i > 0 else 0
for i, idx in enumerate(x_fenbi_seq)
]
else:
tb_price = j_BiType
tb_duration = j_BiType
print "图笔 :", x_fenbi_seq, tb_price
print "图笔dura :", tb_duration
# 线段画到笔上
xdIdxs, xfenTypes = chan.parse2ChanXD(frsBiType, biIdx, chanK)
print '线段', xdIdxs, xfenTypes
x_xd_seq = []
y_xd_seq = []
for i in range(len(xdIdxs)):
if xdIdxs[i] is not None:
fenType = xfenTypes[i]
# dt = chanK['enddate'][biIdx[i]]
# 缠论k线
dt = chanK.index[xdIdxs[i]] if chanK_flag else chanK['enddate'][
xdIdxs[i]]
# print k_data['high'][dt], k_data['low'][dt]
time_long = long(
time.mktime((dt + datetime.timedelta(hours=8)).timetuple()) *
1000000000)
# print x_date_list.index(time_long) if time_long in x_date_list else 0
if fenType == 1:
x_xd_seq.append(x_date_list.index(time_long))
y_xd_seq.append(k_data['high'][dt])
if fenType == -1:
x_xd_seq.append(x_date_list.index(time_long))
y_xd_seq.append(k_data['low'][dt])
# bottom_time = None
# for k_line_dto in m_line_dto.member_list[::-1]:
# if k_line_dto.low == m_line_dto.low:
# # get_price返回的日期，默认时间是08:00:00
# bottom_time = k_line_dto.begin_time.strftime('%Y-%m-%d') +' 08:00:00'
# break
# x_fenbi_seq.append(x_date_list.index(long(time.mktime(datetime.strptime(bottom_time, "%Y-%m-%d %H:%M:%S").timetuple())*1000000000)))
# y_fenbi_seq.append(m_line_dto.low)
# 在原图基础上添加分笔蓝线
print("线段 :%s" % (x_xd_seq))
print("笔值 :%s" % ([str(x) for x in (y_xd_seq)]))
# Y_hat = X * b + a
if show_mpl:
plt.plot(x_fenbi_seq, y_fenbi_seq)
plt.legend([stock_code, cname], loc=0)
plt.title(stock_code + " | " + cname + " | " +
str(quotes.index[-1])[:10],
fontsize=14)
plt.plot(x_xd_seq, y_xd_seq)
if len(quotes) > windows:
roll_mean = pd.rolling_mean(quotes.close, window=windows)
plt.plot(roll_mean, 'r')
zp = zoompan.ZoomPan()
figZoom = zp.zoom_factory(ax1, base_scale=1.1)
figPan = zp.pan_factory(ax1)
'''#subplot2 bar
ax2 = plt.subplot2grid((10, 1), (8, 0), rowspan=2, colspan=1)
# ax2.plot(quotes.vol)
# ax2.set_xticks(np.linspace(-2, len(quotes) + 2, len(Ti)))
ll = min(quotes.vol.values.tolist()) * 0.97
hh = max(quotes.vol.values.tolist()) * 1.03
ax2.set_ylim(ll, hh)
# ax2.set_xticklabels(Ti)
# plt.hist(quotes.vol, histtype='bar', rwidth=0.8)
plt.bar(x_date_list,quotes.vol, label="Volume", color='b')
'''
#画Volume no tight_layout()
'''
pad = 0.25
yl = ax1.get_ylim()
ax1.set_ylim(yl[0]-(yl[1]-yl[0])*pad,yl[1])
ax2 = ax1.twinx()
ax2.set_position(mat.transforms.Bbox([[0.125,0.1],[0.9,0.32]]))
volume = np.asarray(quotes.amount)
pos = quotes['open']-quotes['close']<0
neg = quotes['open']-quotes['close']>=0
idx = quotes.reset_index().index
ax2.bar(idx[pos],volume[pos],color='red',width=1,align='center')
ax2.bar(idx[neg],volume[neg],color='green',width=1,align='center')
yticks = ax2.get_yticks()
ax2.set_yticks(yticks[::3])
'''
# same sharex
plt.subplots_adjust(left=0.05,
bottom=0.08,
right=0.95,
top=0.95,
wspace=0.15,
hspace=0.00)
plt.setp(ax1.get_xticklabels(), visible=False)
yl = ax1.get_ylim()
# ax2 = plt.subplot(212, sharex=ax1)
ax2 = plt.subplot2grid((10, 1), (8, 0),
rowspan=2,
colspan=1,
sharex=ax1)
# ax2.set_position(mat.transforms.Bbox([[0.125,0.1],[0.9,0.32]]))
volume = np.asarray(quotes.amount)
pos = quotes['open'] - quotes['close'] < 0
neg = quotes['open'] - quotes['close'] >= 0
idx = quotes.reset_index().index
ax2.bar(idx[pos], volume[pos], color='red', width=1, align='center')
ax2.bar(idx[neg], volume[neg], color='green', width=1, align='center')
yticks = ax2.get_yticks()
ax2.set_yticks(yticks[::3])
# plt.tight_layout()
# plt.subplots_adjust(hspace=0.00, bottom=0.08)
plt.xticks(rotation=15, horizontalalignment='center')
# plt.bar(x_date_list,quotes.vol, label="Volume", color='b')
# quotes['vol'].plot(kind='bar', ax=ax2, color='g', alpha=0.1)
# ax2.set_ylim([0, ax2.get_ylim()[1] * 2])
# plt.gcf().subplots_adjust(bottom=0.15)
# fig.subplots_adjust(left=0.05, bottom=0.08, right=0.95, top=0.95, wspace=0.15, hspace=0.25)
#scale the x-axis tight
# ax2.set_xlim(min(x_date_list),max(x_date_list))
# the y-ticks for the bar were too dense, keep only every third one
# plt.grid(True)
# plt.xticks(rotation=30, horizontalalignment='center')
# plt.setp( axs[1].xaxis.get_majorticklabels(), rotation=70 )
# plt.legend()
# plt.tight_layout()
# plt.draw()
# plt.show()
plt.show(block=False)
from pylab import plt
import viscojapan as vj
from viscojapan.tsana.post_fit.post import fit_post
site = 'J550'
cmpt = 'e'
ylim = (-0.1, 1)
pplt = vj.inv.PredictedTimeSeriesPlotter(
partition_file = 'deformation_partition.h5',
result_file = 'nrough_06_naslip_11.h5'
)
pplt.plot_post_disp_decomposition(site, cmpt,
marker_for_obs='.')
plt.ylim(ylim)
def ajust_xaxis_tick_labels(ax):
for tick in ax.xaxis.get_major_ticks():
tick.label.set_fontsize(8)
# specify integer or one of preset strings, e.g.
#tick.label.set_fontsize('x-small')
tick.label.set_rotation('vertical')
ajust_xaxis_tick_labels(plt.gca())
plt.savefig('model_prediction_%s-%s.png'%(site, cmpt))
plt.savefig('model_prediction_%s-%s.pdf'%(site, cmpt))
plt.show()
disp0 = np.asarray([ii[1] for ii in tp]).flatten()
us0 = disp0[2::3]
ep = vj.EpochalDisplacement('cumu_post_with_seafloor.h5',
filter_sites=sites)
disp1 = ep[0]
us1 = disp1[2::3]
plt.subplot(121)
bm = vj.MyBasemap(region_code='near')
mplt = vj.MapPlotDisplacement(basemap=bm)
mplt.plot_scalor(us0, sites, cmap='RdBu')
mplt = vj.MapPlotSlab(basemap=bm)
mplt.plot_top()
plt.clim([-1., 1.])
plt.subplot(122)
bm = vj.MyBasemap(region_code='near')
mplt = vj.MapPlotDisplacement(basemap=bm)
im = mplt.plot_scalor(us1, sites, cmap='RdBu')
mplt = vj.MapPlotSlab(basemap=bm)
mplt.plot_top()
plt.clim([-1., 1.])
divider = make_axes_locatable(plt.gca())
cax = divider.append_axes("right", size="5%", pad=0.05)
plt.colorbar(im, cax=cax)
plt.savefig('compare.pdf')
plt.show()
#plt.plot(100,101, '.', color=Sps, label='SpIES')
#plt.plot(100,101, '.', color=sts, label='Stars')
#plt.plot(100,101, '.', color=lzs, label='z<2.2 QSOs')
plt.plot(100,101, '.', color=sc[0], label=r'3.5$\textless$ z $\textless$ 5 QSOs')
#Plot Assef 2013 BOX
WISE,=plt.plot([0.119,4],[18.402,18.402], color='k',linestyle='--',linewidth=1, dashes = (10,10))
plt.plot([0.119,0.119],[0,18.402],color='k',linestyle='--',linewidth=1, dashes = (10,10))
#Plot the W1 5 sigma line in this color space
W1,=plt.plot(col,ch2prime, color='k',linestyle='-.',linewidth=1, dashes = [8,4,2,4])
#SpIES 5sigma line (CH2)
plt.axhline(22.0, linestyle='--',linewidth=1, color='b', dashes = (10,10),label=r'SpIES 5$\sigma$')
plt.xlabel(r'[3.6]$-$[4.5] Color')
plt.ylabel('[4.5]')
first_legend = plt.legend([WISE,W1],['Assef et al. 2013 limits',r'WISE W1 5$\sigma$'],loc=1)
ax = plt.gca().add_artist(first_legend)
plt.legend(loc=2,markerscale=2, scatterpoints=1)
fig.set_size_inches(10.0,10.0)
ax2.minorticks_on()
ax2.yaxis.set_major_locator(majorLocator)
ax2.yaxis.set_major_formatter(majorFormatter)
ax2.yaxis.set_minor_locator(minorLocator)
#ax2.yaxis.set_minor_formatter(majorFormatter)
label = ax2.get_yticks()
plt.yticks(label,rotation=90)
plt.xlim(-4,4)
plt.ylim(13,23)
def _timeseries_postplot(self):
ax = plt.gca()
fig = ax.get_figure()
self.cur_sync.add_axis(ax)
cid_btn = fig.canvas.mpl_connect('button_press_event', self._timeseries_click_cb)
cid_key = fig.canvas.mpl_connect('key_release_event', self._timeseries_key_release_cb)
m = fid['m'][...]
visMs.append(m[-3])
Hes.append(m[-2])
rakes.append(m[-1])
nrough = fid['regularization/roughening/norm'][...]
nroughs.append(nrough)
xlim = (7, 22)
xlim = None
xticks = range(7,22)
plt.subplot(411)
plt.semilogx(nreses, visMs,'o')
plt.xlim(xlim)
plt.gca().set_xticks(xticks)
plt.grid('on')
plt.ylabel('log10(visM/(Pa.s))')
plt.subplot(412)
plt.semilogx(nreses, Hes,'o')
plt.xlim(xlim)
plt.gca().set_xticks(xticks)
plt.grid('on')
plt.ylabel('He/km')
plt.subplot(413)
plt.semilogx(nreses, rakes,'o')
plt.xlim(xlim)
plt.gca().set_xticks(xticks)
plt.ylabel('rake')
def detect_signal(file, window, samplerate, df, every, v, xf, f_center):
##### detect
# loading in sdr data
# loading in the database what frequencies are known
db_satname = ["NOAA19", "NOAA15", "NOAA18", "ISS", "ISS APRS"]
db_f = [137100000.0, 137620000.0, 137912500.0, 145800000.0, 145825000.0]
db_f_band = [24000.0, 24000.0, 24000.0, 6000.0, 6000.0]
f = []
f_band = []
for kkk in range(len(db_f)):
if db_f[kkk] >= f_center - samplerate and db_f[kkk] <= f_center + samplerate:
f.append(db_f[kkk])
f_band.append(db_f_band[kkk])
print(f)
start = []
bandrange = []
for kkkk in range(len(f)):
start.append(int((f[kkkk] - f_center) / df + len(xf)/2.0))
#print(start[-1], (0), df, len(xf)/2.0)
bandrange.append(int(f_band[kkkk]/df))
#print("band", bandrange[-1])
#print("test", start[-1], df, bandrange[-1])
print(time.time(), timeit.default_timer()-time_start, "graphing start")
foundknownsignal = []
foundknownsignal1 = []
for j in range(len(f)):
w1 = []
w2 = []
for ll in range(len(v)):
w1.append(v[ll][start[j] - bandrange[j]: start[j] + bandrange[j]])
w2.append(v[ll][start[j] - (bandrange[j]+int(60000/df)): start[j] + (bandrange[j]+int(60000/df))])
foundknownsignal.append(signal_distance(w1, every))
foundknownsignal1.append(int(np.sum(w1)))
filename = file+"_"+str(f[j])+"_sig"+str(foundknownsignal[j])+"_"+str(foundknownsignal1[j])+".png"
filename1 = file+"_"+str(f[j])+"x_sig"+str(foundknownsignal[j])+"_"+str(foundknownsignal1[j])+".png"
plt.imshow(w1, interpolation='nearest')
plt.gca().invert_yaxis()
plt.savefig(filename, format='png')
#plt.show()
plt.imshow(w2, interpolation='nearest')
#plt.imshow(result)
plt.gca().invert_yaxis()
plt.savefig(filename1, format='png', dpi=100)
#plt.show()
print(time.time(), timeit.default_timer()-time_start, "graphing end")
'''
#signal_strength = signal_strength / np.max(signal_strength)
#signal_strength1 = signal_strength1 / np.max(signal_strength1)
print(len(signal_strength))
print(signal_strength)
#plt.plot(signal_strength)
plt.plot(xf, frr)
plt.show()
'''
return foundknownsignal, foundknownsignal1
mx='{:e}'.format(np.max(y))
mx=10*10**int(mx[-3:])
ttxt='case {} and test function {}: benchmarking {}'.format(nc,nc,eat)
ttxt+='\nbest error: mean {} and std {} after {} evaluations'.format(mean(y[:,-1]),std(y[:,-1]),mean(neval[:,-1]))
date=give_datestring()
plt.figure()
for i,xval in enumerate(x[0]):
if i==0:
rxmin, rxmax = xval-0.004, xval+0.004
else:
rxmin, rxmax = xval-0.03, xval+0.03
rymin, rymax = np.min(y[:,i]), np.max(y[:,i])
rect = plt.Rectangle((rxmin, rymin), rxmax-rxmin, rymax-rymin, facecolor='grey',alpha=0.4)
plt.gca().add_patch(rect)
for i,sc in enumerate(loaded):
plt.plot(x[i],y[i])
if nc != 8: plt.semilogy()
#if nc in yldict: plt.ylim(yldict[nc])
plt.xlabel('FES / maxFES')
plt.ylabel(r'error = $f_i(x)-f_i(x^*)$')
plt.suptitle(ttxt,x=0.5,y=0.98, ha='center',va='top', fontsize=10)
plt.suptitle(date,x=0.97,y=0.02, ha='right',va='bottom', fontsize=8)
plt.savefig(join(plotloc,'allruns_c'+str(nc).zfill(3)+'_'+eat+'_'+df[:-1]+'.png'))
plt.close()
# for i,xval in enumerate(x[0]):
# if i==0:
# rxmin, rxmax = xval-0.004, xval+0.004
# else:
plt.legend()
plt.subplot(5,1,4)
plt.plot(np.arange(v.size),v[:,0],'.b',label='GPU velocities')
plt.legend()
plt.subplot(5,1,5)
for i in range(0,N,32):
# print posH[i::N].shape
plt.plot(np.ones(T+1)*i,posH[i::N],'r-x')
plt.plot(np.ones(1)*i,posH[i,0],'bo')
plt.legend()
plt.show()
elif dim == 2:
fig=plt.figure()
plt.subplot(4,1,1)
plt.plot(my_dict['pts_at_0'][:,0],my_dict['pts_at_0'][:,1],'.r')
plt.gca().invert_yaxis()
plt.subplot(4,1,2)
plt.plot(posT[:,0],posT[:,1],'.b',label='GPU')
plt.gca().invert_yaxis()
plt.legend()
plt.subplot(4,1,3)
plt.plot(my_dict['CPU_results'][0,:],my_dict['CPU_results'][1,:],'.r',label='CPU')
plt.plot(posT[:,0],posT[:,1],'.b',label='GPU')
plt.gca().invert_yaxis()
plt.legend()
plt.subplot(4,1,4)
for i in range(0,N,32):
plt.plot(posH[i::N,0],posH[i::N,1],'r')
# plt.plot(posH[i::N,0],posH[i::N,1],'r')
# plt.plot(posH[i,0],posH[i,1],'bo')
plt.gca().invert_yaxis()
def invert_y_axis_if_needed():
g = plt.gca()
bottom, top = g.get_ylim()
if top>bottom:
g.set_ylim(top, bottom)
def plot_variable(u,
name,
direc,
cmap='gist_yarg',
scale='lin',
numLvls=12,
umin=None,
umax=None,
tp=False,
tpAlpha=0.5,
show=True,
hide_ax_tick_labels=False,
label_axes=True,
title='',
use_colorbar=True,
hide_axis=False,
colorbar_loc='right'):
"""
"""
mesh = u.function_space().mesh()
v = u.compute_vertex_values(mesh)
x = mesh.coordinates()[:, 0]
y = mesh.coordinates()[:, 1]
t = mesh.cells()
d = os.path.dirname(direc)
if not os.path.exists(d):
os.makedirs(d)
if umin != None:
vmin = umin
else:
vmin = v.min()
if umax != None:
vmax = umax
else:
vmax = v.max()
# countour levels :
if scale == 'log':
v[v < vmin] = vmin + 1e-12
v[v > vmax] = vmax - 1e-12
from matplotlib.ticker import LogFormatter
levels = np.logspace(np.log10(vmin), np.log10(vmax), numLvls)
formatter = LogFormatter(10, labelOnlyBase=False)
norm = colors.LogNorm()
elif scale == 'lin':
v[v < vmin] = vmin + 1e-12
v[v > vmax] = vmax - 1e-12
from matplotlib.ticker import ScalarFormatter
levels = np.linspace(vmin, vmax, numLvls)
formatter = ScalarFormatter()
norm = None
elif scale == 'bool':
from matplotlib.ticker import ScalarFormatter
levels = [0, 1, 2]
formatter = ScalarFormatter()
norm = None
fig = plt.figure(figsize=(8, 7))
ax = fig.add_subplot(111)
c = ax.tricontourf(x,
y,
t,
v,
levels=levels,
norm=norm,
cmap=pl.get_cmap(cmap))
plt.axis('equal')
if tp == True:
p = ax.triplot(x, y, t, 'k-', lw=0.25, alpha=tpAlpha)
ax.set_xlim([x.min(), x.max()])
ax.set_ylim([y.min(), y.max()])
if label_axes:
ax.set_xlabel(r'$x$')
ax.set_ylabel(r'$y$')
if hide_ax_tick_labels:
ax.set_xticklabels([])
ax.set_yticklabels([])
if hide_axis:
plt.axis('off')
# include colorbar :
if scale != 'bool' and use_colorbar:
divider = make_axes_locatable(plt.gca())
cax = divider.append_axes(colorbar_loc, "5%", pad="3%")
cbar = plt.colorbar(c, cax=cax, format=formatter, ticks=levels)
pl.mpl.rcParams['axes.titlesize'] = 'small'
tit = plt.title(title)
plt.tight_layout()
d = os.path.dirname(direc)
if not os.path.exists(d):
os.makedirs(d)
plt.savefig(direc + name + '.pdf')
if show:
plt.show()
plt.close(fig)
def signal_substraction(file, window, samplerate, df, every, result_of_fft):
# we asume, that our satellite signals are not contineously received
# so we do a substraction on frequency level. the signal intensity of each frequency for the window kernel
# is substracted from the overall, longtime average of this frequency.
# this allows to see fluctuations better, because they are adding to the average.
# so we can find a superposed signal easier this way.
threshold = meaning(result_of_fft)
signal_lowered = substract(result_of_fft, threshold)
print(time.time(), timeit.default_timer()-time_start, "lowering done")
v = np.zeros((len(signal_lowered), window))
#w = np.zeros((len(signal_lowered), window))
bandwidth = int(window / (2*2*2*2*2*2*2*2*2))
#print("band", bandwidth*df)
for j in range(0, window, bandwidth):
#print(j)
u = []
for kk in range(len(signal_lowered)):
u.append(signal_lowered[kk][j:j+bandwidth])
#u = u/np.max(u)
#print("test", len(u), len(u[0]))
'''
plt.imshow(u, interpolation='nearest')
#plt.imshow(result)
plt.gca().invert_yaxis()
#plt.gca().invert_xaxis()
# #plt.gca().set_xticks(xf)
plt.show()
'''
edged = signal(edge_detection1(u))
#print(np.max(edged))
#graved = centerofgravity(edged)
#signal_strength.append(np.sum(edged))
for k in range(len(edged)):
for l in range(len(edged[k])):
v[k][j+l] = edged[k][l]# + signaaaal
print(time.time(), timeit.default_timer()-time_start, "edging done")
w3 = []
filename3 = file+"_all.png"
for lll in range(len(v)):
w3.append(signal_lowered[lll])
plt.imshow(w3, interpolation='nearest')
#plt.imshow(result)
plt.gca().invert_yaxis()
#plt.figure(figsize=(1200, 800))
plt.savefig(filename3, format='png', dpi=500)
#plt.savefig(filename, format='png', dpi=1000)
#plt.show()
del w3
return v
def plot_variable(u, name, direc, cmap=cmaps.parula, scale='lin', numLvls=100,
umin=None, umax=None, \
tp=False, \
tpAlpha=1.0, show=False,
hide_ax_tick_labels=False, label_axes=True, title='',
use_colorbar=True, hide_axis=False, colorbar_loc='right'):
"""
show -- whether to show the plot on the screen
tp -- show triangle
cmap -- colors:
gist_yarg - grey
gnuplot, hsv, gist_ncar
jet - typical colors
"""
mesh = u.function_space().mesh()
v = u.compute_vertex_values(mesh)
x = mesh.coordinates()[:,0]
y = mesh.coordinates()[:,1]
t = mesh.cells()
if not os.path.isdir( direc ):
os.makedirs(direc)
full_path = os.path.join(direc, name)
if umin != None:
vmin = umin
else:
vmin = v.min()
if umax != None:
vmax = umax
else:
vmax = v.max()
# countour levels :
if scale == 'log':
v[v < vmin] = vmin + 1e-12
v[v > vmax] = vmax - 1e-12
from matplotlib.ticker import LogFormatter
levels = np.logspace(np.log10(vmin), np.log10(vmax), numLvls)
tick_numLvls = min( numLvls, 8 )
tick_levels = np.logspace(np.log10(vmin), np.log10(vmax), tick_numLvls)
formatter = LogFormatter(10, labelOnlyBase=False)
norm = colors.LogNorm()
elif scale == 'lin':
v[v < vmin] = vmin + 1e-12
v[v > vmax] = vmax - 1e-12
from matplotlib.ticker import ScalarFormatter
levels = np.linspace(vmin, vmax, numLvls)
tick_numLvls = min( numLvls, 8 )
tick_levels = np.linspace(vmin, vmax, tick_numLvls)
formatter = ScalarFormatter()
norm = None
elif scale == 'bool':
from matplotlib.ticker import ScalarFormatter
levels = [0, 1, 2]
formatter = ScalarFormatter()
norm = None
fig = plt.figure(figsize=(5,5))
ax = fig.add_subplot(111)
c = ax.tricontourf(x, y, t, v, levels=levels, norm=norm,
cmap=plt.get_cmap(cmap))
plt.axis('equal')
if tp == True:
p = ax.triplot(x, y, t, '-', lw=0.2, alpha=tpAlpha)
ax.set_xlim([x.min(), x.max()])
ax.set_ylim([y.min(), y.max()])
if label_axes:
ax.set_xlabel(r'$x$')
ax.set_ylabel(r'$y$')
if hide_ax_tick_labels:
ax.set_xticklabels([])
ax.set_yticklabels([])
if hide_axis:
plt.axis('off')
# include colorbar :
if scale != 'bool' and use_colorbar:
divider = make_axes_locatable(plt.gca())
cax = divider.append_axes(colorbar_loc, "5%", pad="3%")
cbar = plt.colorbar(c, cax=cax, format=formatter,
ticks=tick_levels)
tit = plt.title(title)
if use_colorbar:
plt.tight_layout(rect=[.03,.03,0.97,0.97])
else:
plt.tight_layout()
plt.savefig( full_path + '.eps', dpi=300)
if show:
plt.show()
plt.close(fig)
def mkplots(self):
# run to make plots of the resulting posteriors. Modified from marginal_plots.py
# from pymultinest. Produces basename+marg.pdf and basename+marge.png files
prefix = self.basename
parameters = json.load(file(prefix + 'params.json'))
n_params = len(parameters)
a = pymultinest.Analyzer(n_params = n_params, outputfiles_basename = prefix)
s = a.get_stats()
p = pymultinest.PlotMarginal(a)
try:
values = a.get_equal_weighted_posterior()
except IOError as e:
print 'Unable to open: %s' % e
return
assert n_params == len(s['marginals'])
modes = s['modes']
dim2 = os.environ.get('D', '1' if n_params > 20 else '2') == '2'
nbins = 100 if n_params < 3 else 20
if dim2:
plt.figure(figsize=(5.1*n_params, 5*n_params))
for i in range(n_params):
plt.subplot(n_params, n_params, i + 1)
plt.xlabel(parameters[i])
m = s['marginals'][i]
plt.xlim(m['5sigma'])
oldax = plt.gca()
x,w,patches = oldax.hist(values[:,i], bins=nbins, edgecolor='grey', color='grey', histtype='stepfilled', alpha=0.2)
oldax.set_ylim(0, x.max())
newax = plt.gcf().add_axes(oldax.get_position(), sharex=oldax, frameon=False)
p.plot_marginal(i, ls='-', color='blue', linewidth=3)
newax.set_ylim(0, 1)
ylim = newax.get_ylim()
y = ylim[0] + 0.05*(ylim[1] - ylim[0])
center = m['median']
low1, high1 = m['1sigma']
print center, low1, high1
newax.errorbar(x=center, y=y,
xerr=np.transpose([[center - low1, high1 - center]]),
color='blue', linewidth=2, marker='s')
oldax.set_yticks([])
#newax.set_yticks([])
newax.set_ylabel("Probability")
ylim = oldax.get_ylim()
newax.set_xlim(m['5sigma'])
oldax.set_xlim(m['5sigma'])
#plt.close()
for j in range(i):
plt.subplot(n_params, n_params, n_params * (j + 1) + i + 1)
p.plot_conditional(i, j, bins=20, cmap = plt.cm.gray_r)
for m in modes:
plt.errorbar(x=m['mean'][i], y=m['mean'][j], xerr=m['sigma'][i], yerr=m['sigma'][j])
ax = plt.gca()
if j == i-1:
plt.xlabel(parameters[i])
plt.ylabel(parameters[j])
[l.set_rotation(45) for l in ax.get_xticklabels()]
else:
ax.set_xticklabels([])
ax.set_yticklabels([])
plt.xlim([m['mean'][i]-5*m['sigma'][i],m['mean'][i]+5*m['sigma'][i]])
plt.ylim([m['mean'][j]-5*m['sigma'][j],m['mean'][j]+5*m['sigma'][j]])
#plt.savefig('cond_%s_%s.pdf' % (params[i], params[j]), bbox_tight=True)
#plt.close()
plt.tight_layout()
plt.savefig(prefix + 'marg.pdf')
plt.savefig(prefix + 'marg.png')
plt.close()
else:
from matplotlib.backends.backend_pdf import PdfPages
print '1dimensional only. Set the D environment variable D=2 to force'
print '2d marginal plots.'
pp = PdfPages(prefix + 'marg1d.pdf')
for i in range(n_params):
plt.figure(figsize=(5, 5))
plt.xlabel(parameters[i])
m = s['marginals'][i]
plt.xlim(m['5sigma'])
oldax = plt.gca()
x,w,patches = oldax.hist(values[:,i], bins=20, edgecolor='grey', color='grey', histtype='stepfilled', alpha=0.2)
oldax.set_ylim(0, x.max())
newax = plt.gcf().add_axes(oldax.get_position(), sharex=oldax, frameon=False)
p.plot_marginal(i, ls='-', color='blue', linewidth=3)
newax.set_ylim(0, 1)
ylim = newax.get_ylim()
y = ylim[0] + 0.05*(ylim[1] - ylim[0])
center = m['median']
low1, high1 = m['1sigma']
print center, low1, high1
newax.errorbar(x=center, y=y,
xerr=np.transpose([[center - low1, high1 - center]]),
color='blue', linewidth=2, marker='s')
oldax.set_yticks([])
newax.set_ylabel("Probability")
ylim = oldax.get_ylim()
newax.set_xlim(m['5sigma'])
oldax.set_xlim(m['5sigma'])
plt.savefig(pp, format='pdf', bbox_inches='tight')
plt.close()
pp.close()
tic = time.clock()
# for k in range(10):
posT = flowL.calc_flowline(my_dict['xmins'], my_dict['ymins'],
my_dict['xmaxs'], my_dict['ymaxs'],
my_dict['Trels'], my_dict['As'], pos0, dt,
my_dict['nTimeSteps'], nStepsODEsolver)
toc = time.clock()
print 'Time:', toc - tic, '[sec]'
#sw.toctic("GPU compute")
# ipshell('hi')
if TF.show:
fig = plt.figure()
plt.plot(posT[:, 0], posT[:, 1], '.')
plt.gca().invert_yaxis()
fig.show()
# plotting
lines_shape = (512, 512)
fig = plt.figure()
for i in range(lines_shape[0]):
plt.plot(posT[i * lines_shape[1]:(i + 1) * lines_shape[1], 0],
posT[i * lines_shape[1]:(i + 1) * lines_shape[1], 1])
plt.gca().invert_yaxis()
fig.show()
raw_input()
range_start=y.min()
range_end=y.max()
# Add noise
y += 0.4*np.random.standard_normal(y.shape)
if 1:
plt.figure(0)
of.plt.set_figure_size_and_location(1000,0,1000,500)
plt.clf()
plt.subplot(121)
plt.cla()
plt.plot(x,y,'.',lw=3)
plt.title('data')
ax = plt.gca()
ax.tick_params(axis='y', labelsize=50)
ax.tick_params(axis='x', labelsize=30)
nPtsDense = 10000
mr = MonotonicRegression(base=[12],nLevels=4)
mr.set_dense(domain_start=-10,domain_end=10)
mr.set_data(x=x,y=y,range_start=range_start,range_end=range_end)
print mr
