def createPDF(self):
# Loop through each pacakage
for ind in range(len(self.mBank["dateEnd"])):
# Generate type of text to be used for report
text = self.genText(ind)
# Create section
with self.mDoc.create(
pyl.Section(self.mBank["dateBegin"][ind] + " - " +
self.mBank["dateEnd"][ind])) as sec:
# Add description of table
sec.append(text["description"])
# Add long table of statistics to section
self.addTable(
sec,
self.mBank["statistics"][ind],
subxlabel={
"#": ["count"],
"Hours":
["mean", "lower quartile", "median", "upper quartile"]
})
self.addGraph(sec,
self.mBank["graphs"][ind],
title=text["plotTitle"])
# Append new page after table/graph
self.mDoc.append(pyl.NewPage())
# Generate the pdf, and clean the latex files afterwards
self.mDoc.generate_pdf(clean=True)
return
def main():
if not os.path.exists("report"):
os.mkdir("report")
global tumor
global max_distance
global e_method
for t in tumors:
print(t)
doc = pylatex.Document('report/results' + t)
doc.append(pylatex.NewPage())
with doc.create(pylatex.Section(t)):
for m in e_methods:
for d in max_distances:
tumor = t
max_distance = d
e_method = m
with doc.create(
pylatex.Subsection("Score = " + m.tag +
", Max dist. = " + str(d))):
do_analysis(doc)
doc.generate_pdf(clean_tex=False)
def add_page3(self):
doc = self.m_doc
doc.append("Influence of mesocrystal height")
doc.append(pl.VerticalSpace("2cm"))
doc.append("\n")
with doc.create(
pl.MiniPage(width=r"0.2\textwidth",
height=r"0.25\textwidth",
content_pos='t')):
lines = data.split("\n")
with doc.create(pl.Tabular('l l', row_height=0.8)) as table:
myfont = [mono, tiny]
for l in lines:
parts = l.split(":")
print(parts)
if len(parts) == 2:
table.add_row(parts[0], parts[1], mapper=myfont)
elif len(parts) == 1:
table.add_hline()
table.add_row((l, " "), mapper=myfont)
doc.append("\n")
with doc.create(
pl.MiniPage(width=r"0.8\textwidth",
height=r"0.25\textwidth",
content_pos='t')):
doc.append(
pl.Command('includegraphics',
options='scale=0.8',
arguments='meso.png'))
doc.append("\n")
doc.append(pl.NewPage())
def _init_doc(self, add_date=True):
doc = pyl.Document(geometry_options=geometry_options)
doc.packages.append(pyl.Package("float"))
doc.packages.append(pyl.Package("hyperref"))
doc.preamble.append(pyl.Command("title", self.title))
if add_date:
doc.preamble.append(pyl.Command("date", pyl.NoEscape(r"\today")))
else:
doc.preamble.append(pyl.Command("date", pyl.NoEscape(r"")))
doc.append(pyl.NoEscape(r"\maketitle"))
doc.append(pyl.NewPage())
doc.append(pyl.Command("tableofcontents"))
doc.append(pyl.NewPage())
return doc
def make_subfigure(self, fig_funcs, layout=(5, 4), close=True):
#todo figure out how to iterate properly
n = np.product(layout)
chunks = grouper(n, fig_funcs)
w = str(1 / layout[1])
pbar = tqdm(total=len(fig_funcs))
for chunk in chunks:
with self.doc.create(pyl.Figure(position='ht')) as tex_fig:
for i, fig_func in enumerate(chunk):
if fig_func is None:
continue
with self.doc.create(
pyl.SubFigure(
position='b',
width=pyl.NoEscape(w +
r'\linewidth'))) as subfig:
fig = fig_func()
file_path = self._save_fig(
fig,
bbox_inches='tight') # todo access these kwargs
if close:
plt.close(fig)
subfig.add_image(file_path,
width=pyl.NoEscape(r'\linewidth'))
if i % layout[1] == layout[1] - 1:
self.doc.append('\n')
pbar.update(1)
self.doc.append(pyl.NewPage())
def add_page2(self):
doc = self.m_doc
with doc.create(pl.Section('A section 2')):
doc.append('Some regular text and some ')
doc.append(italic('italic text. '))
with doc.create(pl.Figure(position='h!')) as kitten_pic:
kitten_pic.add_image("meso.png",
width=NoEscape(r'0.75\textwidth'))
doc.append(pl.NewPage())
def _init_doc(self, name, add_date=True):
doc = pyl.Document(name, geometry_options=geometry_options)
doc.packages.append(pyl.Package('hyperref'))
doc.preamble.append(pyl.Command('title', f'Supplementary Figures for {name}'))
if add_date:
doc.preamble.append(pyl.Command('date', pyl.NoEscape(r'\today')))
else:
doc.preamble.append(pyl.Command('date', pyl.NoEscape(r'')))
doc.append(pyl.NoEscape(r'\maketitle'))
doc.append(pyl.NewPage())
return doc
def new_page(self):
self.doc.append(pylatex.NewPage())
self.len_last_page = 0
