Exemple #1
0
	def registerCustomExecutables(self, workflow=None):
		
		"""
		2011-11-28
		"""
		AbstractVervetWorkflow.registerCustomExecutables(self, workflow=workflow)
		AbstractAlignmentAndVCFWorkflow.registerCustomExecutables(self, workflow=workflow)
		
		if workflow is None:
			workflow = self
		namespace = workflow.namespace
		version = workflow.version
		operatingSystem = workflow.operatingSystem
		architecture = workflow.architecture
		clusters_size = workflow.clusters_size
		site_handler = workflow.site_handler
		vervetSrcPath = self.vervetSrcPath
		
		#2012.8.7 each cell is a tuple of (executable, clusterSizeMultipler (0 if u do not need clustering)
		executableClusterSizeMultiplierList = []
		self.addExecutableAndAssignProperClusterSize(executableClusterSizeMultiplierList, defaultClustersSize=self.clusters_size)
Exemple #2
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	def extra__init__(self):
		"""
		2013.2.14
		"""
		AbstractVervetWorkflow.extra__init__(self)
		AbstractAlignmentAndVCFWorkflow.extra__init__(self)