def test_run_pypeit():
# Get the directories
rawdir = os.path.join(os.environ['PYPEIT_DEV'], 'RAW_DATA',
'Shane_Kast_blue', '600_4310_d55')
assert os.path.isdir(rawdir), 'Incorrect raw directory'
# Just get a few files
testrawdir = os.path.join(rawdir, 'TEST')
if os.path.isdir(testrawdir):
shutil.rmtree(testrawdir)
os.makedirs(testrawdir)
files = [
'b21.fits.gz', 'b22.fits.gz', 'b23.fits.gz', 'b27.fits.gz',
'b1.fits.gz', 'b11.fits.gz', 'b12.fits.gz', 'b13.fits.gz'
]
for f in files:
shutil.copy(os.path.join(rawdir, f), os.path.join(testrawdir, f))
outdir = os.path.join(os.getenv('PYPEIT_DEV'), 'REDUX_OUT_TEST')
# For previously failed tests
if os.path.isdir(outdir):
shutil.rmtree(outdir)
# Run the setup
sargs = setup.parser([
'-r', testrawdir, '-s', 'shane_kast_blue', '-c all', '-o',
'--output_path', outdir
])
setup.main(sargs)
# Change to the configuration directory and set the pypeit file
configdir = os.path.join(outdir, 'shane_kast_blue_A')
pyp_file = os.path.join(configdir, 'shane_kast_blue_A.pypeit')
assert os.path.isfile(pyp_file), 'PypeIt file not written.'
# Perform the original reductions
pargs = run_pypeit.parser([pyp_file, '-o'])
run_pypeit.main(pargs)
# Now try to reuse the old masters
pargs = run_pypeit.parser([pyp_file, '-o', '-m'])
run_pypeit.main(pargs)
# Now try not overwriting and using the old masters
pargs = run_pypeit.parser([pyp_file, '-m'])
run_pypeit.main(pargs)
# Clean-up
shutil.rmtree(outdir)
shutil.rmtree(testrawdir)
def test_run_pypeit_calib_only():
# Get the directories
rawdir = os.path.join(os.environ['PYPEIT_DEV'], 'RAW_DATA',
'shane_kast_blue', '600_4310_d55')
assert os.path.isdir(rawdir), 'Incorrect raw directory'
# File list
all_files = {
'arcs': ['b1.fits.gz'],
'flats': ['b11.fits.gz', 'b12.fits.gz', 'b13.fits.gz'],
'bias': ['b21.fits.gz', 'b22.fits.gz', 'b23.fits.gz'],
}
all_masters = [
'MasterArc_A_1_01.fits', 'MasterTiltimg_A_1_01.fits',
'MasterBias_A_1_01.fits', 'MasterTilts_A_1_01.fits',
'MasterEdges_A_1_01.fits.gz', 'MasterFlat_A_1_01.fits',
'MasterWaveCalib_A_1_01.json'
]
# Just get a few files
for ss, sub_files, masters in zip(
range(3),
[['arcs', 'flats', 'bias'], ['arcs', 'bias'], ['flats', 'bias']], [
all_masters, [
'MasterArc_A_1_01.fits', 'MasterTiltimg_A_1_01.fits'
], ['MasterEdges_A_1_01.fits.gz']
]):
# Grab the subset
files = []
for sub_file in sub_files:
files += all_files[sub_file]
#
testrawdir = os.path.join(rawdir, 'TEST')
if os.path.isdir(testrawdir):
shutil.rmtree(testrawdir)
os.makedirs(testrawdir)
for f in files:
shutil.copy(os.path.join(rawdir, f), os.path.join(testrawdir, f))
outdir = os.path.join(os.getenv('PYPEIT_DEV'), 'REDUX_OUT_TEST')
# For previously failed tests
if os.path.isdir(outdir):
shutil.rmtree(outdir)
# Run the setup
sargs = setup.parser([
'-r', testrawdir, '-s', 'shane_kast_blue', '-c all', '-o',
'--output_path', outdir
])
setup.main(sargs)
# Change to the configuration directory and set the pypeit file
configdir = os.path.join(outdir, 'shane_kast_blue_A')
pyp_file = os.path.join(configdir, 'shane_kast_blue_A.pypeit')
assert os.path.isfile(pyp_file), 'PypeIt file not written.'
# Perform the calib-only reduction
pargs = run_pypeit.parser([pyp_file, '-c', '-r', configdir])
run_pypeit.main(pargs)
# Test!
for master_file in masters:
assert os.path.isfile(
os.path.join(configdir, 'Masters',
master_file)), 'Master File {:s} missing!'.format(
master_file)
# Clean-up
shutil.rmtree(outdir)
shutil.rmtree(testrawdir)
def test_run_pypeit():
# Get the directories
rawdir = os.path.join(os.environ['PYPEIT_DEV'], 'RAW_DATA',
'shane_kast_blue', '600_4310_d55')
assert os.path.isdir(rawdir), 'Incorrect raw directory'
# Just get a few files
testrawdir = os.path.join(rawdir, 'TEST')
if os.path.isdir(testrawdir):
shutil.rmtree(testrawdir)
os.makedirs(testrawdir)
files = [
'b21.fits.gz', 'b22.fits.gz', 'b23.fits.gz', 'b27.fits.gz',
'b1.fits.gz', 'b11.fits.gz', 'b12.fits.gz', 'b13.fits.gz'
]
for f in files:
shutil.copy(os.path.join(rawdir, f), os.path.join(testrawdir, f))
outdir = os.path.join(os.getenv('PYPEIT_DEV'), 'REDUX_OUT_TEST')
# For previously failed tests
if os.path.isdir(outdir):
shutil.rmtree(outdir)
# Run the setup
sargs = setup.parser([
'-r', testrawdir, '-s', 'shane_kast_blue', '-c all', '-o',
'--output_path', outdir
])
setup.main(sargs)
# Change to the configuration directory and set the pypeit file
configdir = os.path.join(outdir, 'shane_kast_blue_A')
pyp_file = os.path.join(configdir, 'shane_kast_blue_A.pypeit')
assert os.path.isfile(pyp_file), 'PypeIt file not written.'
# Try to run with -m and -o
pargs = run_pypeit.parser([pyp_file, '-o', '-m', '-r', configdir])
run_pypeit.main(pargs)
# #########################################################33
# Test!!
# Files exist
assert os.path.isfile(
os.path.join(configdir, 'Science',
'spec2d_b27-J1217p3905_KASTb_2015May20T045733.560.fits'))
# spec1d
spec1d_file = os.path.join(
configdir, 'Science',
'spec1d_b27-J1217p3905_KASTb_2015May20T045733.560.fits')
assert os.path.isfile(spec1d_file)
specObjs = specobjs.SpecObjs.from_fitsfile(spec1d_file)
# Flexure
assert specObjs[0].FLEX_SHIFT != 0., 'Flexure not calculated!'
# Helio
assert specObjs[0].VEL_CORR != 0., 'Heliocentric not calculated!'
# Now re-use those master files
pargs = run_pypeit.parser([pyp_file, '-o', '-m', '-r', configdir])
run_pypeit.main(pargs)
# Clean-up
shutil.rmtree(outdir)
shutil.rmtree(testrawdir)