def test_split_ionfile_by_results(self):
ion_file = "NGS/ion_file.fastq"
blast_chunk = "NGS/_reaa.csv"
NGS.split_ionfile_by_results(ion_file, blast_chunk)
cmd = "grep -c '^@' NGS/_reaa.fastq"
p = subprocess.check_output(cmd, shell=True)
self.assertEqual(p.strip(), '1001')
shutil.copyfile("NGS/_reaa.fastq.bak", "NGS/_reaa.fastq")
def test_split_ionfile_by_results(self):
ion_file = os.path.join(self.cwd, "NGS/ion_file.fastq")
blast_chunk = os.path.join(self.cwd, "NGS/_reaa.csv")
NGS.split_ionfile_by_results(ion_file, blast_chunk)
cmd = "grep -c '^@' " + os.path.join(self.cwd, "NGS", "_reaa.fastq")
p = subprocess.check_output(cmd, shell=True)
self.assertEqual(int(p.strip()), 1001)
os.remove(os.path.join(self.cwd, "NGS", "_reaa.fastq"))
