def test_zinb_1_gate(total_count, probs):
# if gate is 1 ZINB is Delta(0)
zinb_ = ZeroInflatedNegativeBinomial(
torch.ones(1), total_count=torch.tensor(total_count), probs=torch.tensor(probs)
)
delta = Delta(torch.zeros(1))
s = torch.tensor([0.0, 1.0])
zinb_prob = zinb_.log_prob(s)
delta_prob = delta.log_prob(s)
assert_close(zinb_prob, delta_prob)
def test_zinb_0_gate(total_count, probs):
# if gate is 0 ZINB is NegativeBinomial
zinb_ = ZeroInflatedNegativeBinomial(
torch.zeros(1), total_count=torch.tensor(total_count), probs=torch.tensor(probs)
)
neg_bin = NegativeBinomial(torch.tensor(total_count), probs=torch.tensor(probs))
s = neg_bin.sample((20,))
zinb_prob = zinb_.log_prob(s)
neg_bin_prob = neg_bin.log_prob(s)
assert_close(zinb_prob, neg_bin_prob)
def test_zinb_mean_variance(gate, total_count, logits):
num_samples = 1000000
zinb_ = ZeroInflatedNegativeBinomial(
torch.tensor(gate),
total_count=torch.tensor(total_count),
logits=torch.tensor(logits),
)
s = zinb_.sample((num_samples,))
expected_mean = zinb_.mean
estimated_mean = s.mean()
expected_std = zinb_.stddev
estimated_std = s.std()
assert_close(expected_mean, estimated_mean, atol=1e-01)
assert_close(expected_std, estimated_std, atol=1e-1)
def test_zinb_1_gate(total_count, probs):
# if gate is 1 ZINB is Delta(0)
zinb1 = ZeroInflatedNegativeBinomial(
total_count=torch.tensor(total_count),
gate=torch.ones(1),
probs=torch.tensor(probs),
)
zinb2 = ZeroInflatedNegativeBinomial(
total_count=torch.tensor(total_count),
gate_logits=torch.tensor(math.inf),
probs=torch.tensor(probs),
)
delta = Delta(torch.zeros(1))
s = torch.tensor([0.0, 1.0])
zinb1_prob = zinb1.log_prob(s)
zinb2_prob = zinb2.log_prob(s)
delta_prob = delta.log_prob(s)
assert_close(zinb1_prob, delta_prob)
assert_close(zinb2_prob, delta_prob)
def test_zinb_0_gate(total_count, probs):
# if gate is 0 ZINB is NegativeBinomial
zinb1 = ZeroInflatedNegativeBinomial(
total_count=torch.tensor(total_count),
gate=torch.zeros(1),
probs=torch.tensor(probs),
)
zinb2 = ZeroInflatedNegativeBinomial(
total_count=torch.tensor(total_count),
gate_logits=torch.tensor(-99.9),
probs=torch.tensor(probs),
)
neg_bin = NegativeBinomial(torch.tensor(total_count),
probs=torch.tensor(probs))
s = neg_bin.sample((20, ))
zinb1_prob = zinb1.log_prob(s)
zinb2_prob = zinb2.log_prob(s)
neg_bin_prob = neg_bin.log_prob(s)
assert_close(zinb1_prob, neg_bin_prob)
assert_close(zinb2_prob, neg_bin_prob)