def run_simulator(seed, num_days):
"""
Runs the simulator once.
Configures the num_days and seed parameter of the simulator.
:param seed for the random number generator, used by the simulator
:param num_days the number of days (steps) the simulator needs to run.
"""
simulator = Simulation()
simulator.loadRunConfig("../config/run_default_nolog.xml")
set_influenza(simulator)
simulator.runConfig.setParameter("rng_seed", seed)
simulator.run()
def runBaseline():
"""
Execute the baseline case.
"""
sim = Simulation()
# Set parameters
sim.runConfig.setParameter("output_prefix", "Baseline")
sim.runConfig.setParameter("num_days", 60)
sim.runConfig.setParameter("disease_config_file",
"data/disease_measles.xml")
sim.runConfig.setParameter("r0", 11)
sim.runConfig.setParameter("seeding_rate", 0)
sim.runConfig.setParameter("seeding_age_min", 1)
sim.runConfig.setParameter("seeding_age_max", 99)
sim.runConfig.setParameter("population_file", "data/pop_flanders600.csv")
sim.runConfig.setParameter("output_persons", "false")
sim.runConfig.setParameter("num_participants_survey", 10000)
sim.runConfig.setParameter("age_contact_matrix_file",
"data/contact_matrix_flanders_subpop.xml")
sim.runConfig.setParameter("log_level", "SusceptibleContacts")
sim.runConfig.setParameter("start_date", "2017-01-01")
sim.runConfig.setParameter("holidays_file", "data/holidays_none.json")
# immunity_profile
# vaccine_profile
# vaccine_link_probability
# immunity_rate
# vaccine_rate
sim.runConfig.setParameter("local_information_policy",
"NoLocalInformation")
sim.runConfig.setParameter("global_information_policy",
"NoGlobalInformation")
sim.runConfig.setParameter("belief_policy/name", "NoBelief")
sim.runConfig.setParameter("behaviour_policy", "NoBehaviour")
sim.runConfig.setParameter("rng_seed", 1)
# Register callbacks
sim.RegisterCallback(measureSusceptiblesClustering)
sim.RegisterCallback(seedInfection)
# TODO run forks with varying parameters (itertools.product(...))
# Run simulation
sim.run()
import pystride
from pystride.Simulation import Simulation
pystride.workspace = "simulations"
def checkFinished(sim, timestep):
pop = sim.GetSimulator().GetPopulation()
infected = pop.GetInfectedCount()
print("Amount infected: ", infected)
if infected >= 4000:
sim.Stop()
# Configure simulation
simulation = Simulation()
simulation.loadRunConfig("../config/run_default.xml")
simulation.runConfig.setParameter("generate_person_file", 0)
simulation.registerCallback(checkFinished)
simulation.run()
