def test_metadata_mztab1(self):
reader_mztab1 = mztab.MzTab(self.path_mztab1)
self.assertEqual(len(reader_mztab1.metadata), 208)
value_from_mztab1 = reader_mztab1.metadata['fixed_mod[1]']
self.assertEqual(value_from_mztab1, 'CHEMMOD:57.0214637236')
def test_metadata_mztab2(self):
reader_mztab2 = mztab.MzTab(self.path_mztab2)
self.assertEqual(len(reader_mztab2.metadata), 61)
value_from_mztab2 = reader_mztab2.metadata['sample_processing[1]']
self.assertEqual(value_from_mztab2,
'high performance liquid chromatography')
def test_getitem_mztab2(self):
reader_mztab2 = mztab.MzTab(self.path_mztab2)
table = reader_mztab2['sme']
self.assertIsInstance(table, mztab.pd.DataFrame)
def test_getitem_mztab1(self):
reader_mztab1 = mztab.MzTab(self.path_mztab1)
table = reader_mztab1['psm']
self.assertIsInstance(table, mztab.pd.DataFrame)
def test_iter_mztab2(self):
reader_mztab2 = mztab.MzTab(self.path_mztab2)
tables = list(reader_mztab2)
self.assertEqual(len(tables), 3)
[self.assertEqual(len(t), 2) for t in tables]
def test_metadata_variant_M(self):
reader_mztab2 = mztab.MzTab(self.path_mztab2)
self.assertEqual(reader_mztab2.variant, 'M')
def test_metadata_variant_P(self):
reader_mztab1 = mztab.MzTab(self.path_mztab1)
self.assertEqual(reader_mztab1.variant, 'P')