def test_sex(dash_threaded):
"""Test the hiding of chromosome Y if sex is set to female."""
prop_type = 'str'
def assert_callback(prop_value, nclicks, input_value):
answer = ''
if nclicks is not None:
answer = FAIL
if PROP_TYPES[prop_type](input_value) == prop_value:
answer = PASS
return answer
template_test_component(dash_threaded,
APP_NAME,
assert_callback,
ideogram_test_props_callback,
'sex',
'female',
prop_type=prop_type,
component_base=COMPONENT_REACT_BASE,
**BASIC_PROPS)
driver = dash_threaded.driver
# assert the presence of the chromosome Y
chromosomes = wait_for_elements_by_css_selector(driver, '.chromosome')
num_chromosoms = len(chromosomes)
assert num_chromosoms == 24
has_chr_y = False
for chromosome in chromosomes:
if 'chrY' in chromosome.get_attribute('id'):
has_chr_y = True
assert has_chr_y is True
# trigger a change of the component prop
btn = wait_for_element_by_css_selector(driver,
'#test-{}-btn'.format(APP_NAME))
btn.click()
# assert the absence of the chromosome Y
chromosomes = wait_for_elements_by_css_selector(driver,
'.chromosome',
timeout=20)
num_chromosoms = len(chromosomes)
assert num_chromosoms == 23
has_chr_y = False
for chromosome in chromosomes:
if 'chrY' in chromosome.get_attribute('id'):
has_chr_y = True
assert has_chr_y is False
def test_showlegend(dash_threaded):
"""Test the legend display."""
def assert_callback(prop_value, nclicks, input_value):
answer = ''
if nclicks is not None:
if PROP_TYPES['bool'](input_value) == prop_value:
answer = PASS
return answer
template_test_component(
dash_threaded,
APP_NAME,
assert_callback,
oncoprint_props_callback,
'showlegend',
'False',
prop_type='bool',
component_base=COMPONENT_REACT_BASE,
data=TEST_DATA
)
driver = dash_threaded.driver
# assert there is a legend (bar)
legend = wait_for_elements_by_css_selector(driver, 'g.traces')
assert len(legend) != 0
# trigger change of the component prop
btn = wait_for_element_by_css_selector(driver, '#test-{}-btn'.format(APP_NAME))
btn.click()
# assert there is no more legend (bar)
legend = driver.find_elements_by_class_name('legendbar')
assert len(legend) == 0
def test_orientation(dash_threaded):
"""Test orientation prop."""
prop_type = 'str'
def assert_callback(prop_value, nclicks, input_value):
answer = ''
if nclicks is not None:
answer = FAIL
if PROP_TYPES[prop_type](input_value) == prop_value:
answer = PASS
return answer
template_test_component(dash_threaded,
APP_NAME,
assert_callback,
ideogram_test_props_callback,
'orientation',
'horizontal',
prop_type=prop_type,
component_base=COMPONENT_REACT_BASE,
**BASIC_PROPS)
driver = dash_threaded.driver
# assert presence of chromosomes' rotation
chromosoms = wait_for_elements_by_css_selector(
driver, '.chromosome-set-container')
for chromosom in chromosoms:
assert 'rotate(90)' in str(chromosom.get_attribute('transform'))
# trigger a change of the component prop
btn = wait_for_element_by_css_selector(driver,
'#test-{}-btn'.format(APP_NAME))
btn.click()
# assert absence of chromosomes' rotation
chromosoms = wait_for_elements_by_css_selector(
driver, '.chromosome-set-container')
for chromosom in chromosoms:
assert 'rotate(90)' not in str(chromosom.get_attribute('transform'))
def test_homology(dash_threaded):
"""Test the display of a basic homology"""
prop_type = 'dict'
prop_val = {
"chrOne": {
"organism": "9606",
"start": [10001, 105101383],
"stop": [27814790, 156030895],
},
"chrTwo": {
"organism": "9606",
"start": [3000000, 125101383],
"stop": [9000000, 196130895],
},
}
def assert_callback(prop_value, nclicks, input_value):
answer = ''
if nclicks is not None:
answer = FAIL
if PROP_TYPES[prop_type](input_value) == prop_value:
answer = PASS
return answer
template_test_component(
dash_threaded,
APP_NAME,
assert_callback,
ideogram_test_props_callback,
'homology',
json.dumps(prop_val),
prop_type=prop_type,
component_base=COMPONENT_REACT_BASE,
perspective="comparative",
chromosomes=["1", "2"],
**BASIC_PROPS
)
driver = dash_threaded.driver
# assert the absence of homology region
regions = driver.find_elements_by_class_name('syntenicRegion')
assert len(regions) == 0
# trigger a change of the component prop
btn = wait_for_element_by_css_selector(driver, '#test-{}-btn'.format(APP_NAME))
btn.click()
# assert the presence of homology region
regions = wait_for_elements_by_css_selector(driver, '.syntenicRegion', timeout=20)
assert len(regions) > 0
def test_full_chromosome_labels(dash_threaded):
"""Test the full chromosome label display/hiding"""
prop_type = 'bool'
def assert_callback(prop_value, nclicks, input_value):
answer = ''
if nclicks is not None:
answer = FAIL
if PROP_TYPES[prop_type](input_value) == prop_value:
answer = PASS
return answer
template_test_component(
dash_threaded,
APP_NAME,
assert_callback,
ideogram_test_props_callback,
'fullChromosomeLabels',
'True',
prop_type=prop_type,
component_base=COMPONENT_REACT_BASE,
chromosomes=['1'],
fullChromosomeLabels=False,
**BASIC_PROPS
)
driver = dash_threaded.driver
# assert the absence of a full label
regions = wait_for_elements_by_css_selector(driver, 'tspan')
assert len(regions) == 1
# trigger a change of the component prop
btn = wait_for_element_by_css_selector(driver, '#test-{}-btn'.format(APP_NAME))
btn.click()
# assert the presence of a full label
regions = wait_for_elements_by_css_selector(driver, 'tspan', timeout=20)
assert len(regions) == 2
def test_chromosomes_wrong_input(dash_threaded):
"""Test input of a wrong chromosome name."""
prop_type = 'list'
def assert_callback(prop_value, nclicks, input_value):
answer = ''
if nclicks is not None:
answer = FAIL
if PROP_TYPES[prop_type](input_value) == prop_value:
answer = PASS
return answer
template_test_component(dash_threaded,
APP_NAME,
assert_callback,
ideogram_test_props_callback,
'chromosomes',
'1,D,3',
prop_type=prop_type,
component_base=COMPONENT_REACT_BASE,
**BASIC_PROPS)
driver = dash_threaded.driver
# assert 22 chromosomes + X and Y chromosomes
chromosomes = wait_for_elements_by_css_selector(driver, '.chromosome')
assert len(chromosomes) == 24
# trigger a change of the component prop
btn = wait_for_element_by_css_selector(driver,
'#test-{}-btn'.format(APP_NAME))
btn.click()
# assert the set of chromosomes contains 2 chromosomes
chromosomes = wait_for_elements_by_css_selector(driver,
'.chromosome',
timeout=20)
assert len(chromosomes) == 2
def test_ploidy(dash_threaded):
"""Test duplication of each chromosome."""
prop_type = 'int'
def assert_callback(prop_value, nclicks, input_value):
answer = ''
if nclicks is not None:
answer = FAIL
if PROP_TYPES[prop_type](input_value) == prop_value:
answer = PASS
return answer
template_test_component(dash_threaded,
APP_NAME,
assert_callback,
ideogram_test_props_callback,
'ploidy',
'2',
prop_type=prop_type,
component_base=COMPONENT_REACT_BASE,
**BASIC_PROPS)
driver = dash_threaded.driver
# assert 22 chromosomes + X and Y chromosomes
chromosomes = wait_for_elements_by_css_selector(driver, '.chromosome')
assert len(chromosomes) == 24
# trigger a change of the component prop
btn = wait_for_element_by_css_selector(driver,
'#test-{}-btn'.format(APP_NAME))
btn.click()
# assert doubling of the 22 chromosomes + X and Y chromosomes
chromosomes = wait_for_elements_by_css_selector(driver,
'.chromosome',
timeout=20)
assert len(chromosomes) == 46
def test_show_chromosome_labels(dash_threaded):
"""Test the display/hiding of chromosomes labels."""
prop_type = 'bool'
def assert_callback(prop_value, nclicks, input_value):
answer = ''
if nclicks is not None:
answer = FAIL
if PROP_TYPES[prop_type](input_value) == prop_value:
answer = PASS
return answer
template_test_component(
dash_threaded,
APP_NAME,
assert_callback,
ideogram_test_props_callback,
'showChromosomeLabels',
'True',
prop_type=prop_type,
component_base=COMPONENT_REACT_BASE,
**BASIC_PROPS
)
driver = dash_threaded.driver
# assert the absence of chromosomes' labels
labels = driver.find_elements_by_class_name('chrLabel')
assert len(labels) == 0
# trigger a change of the component prop
btn = wait_for_element_by_css_selector(driver, '#test-{}-btn'.format(APP_NAME))
btn.click()
# assert the presence of chromosomes' labels
labels = wait_for_elements_by_css_selector(driver, '.chrLabel', timeout=20)
assert len(labels) > 0
def elements_selector(self, selector):
return wait_for_elements_by_css_selector(self.driver, selector[2:-1])
